| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0627 |
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| Symbol | |
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| ID | 4173649 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 725314 |
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| End bp | 727350 |
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| Gene Length | 2037 bp |
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| Protein Length | 678 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 638053630 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_660210 |
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| Protein GI | 109896955 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGAGTGA GCAATACATC TGCAGAATTA CATGCGCTAA ATAGTCAGGA TGCCGCCAAG
TTACTGTATA GCAATACGGG GGCGGCCTGC TCCATCACTT TTGCAGCCAG TAGCGTACTT
GCATTTGGTT TTTTGGGCAC AGAAGTGAGC GAAATCAAGC AAGTTTGGTG GGGATGCATG
TTAGTGGTGT TAACGCTGCG CTTGATTGAC GGTATTTACT GGCAACGCAA AATCAAACCA
CGAAATGATT TTGATGGCGA AGCAGCGCAA CGGCGTTTTG GCATTGGCTG TATTGCCACC
GCATTCGTAT GGGCCTGCTT ACCAATATTA ACGTTCGATC AGGTTAATTT GCTTGAGTTT
GCGACCATGA TCATTGTGTT GTCTTCCATG GCGGCCGGTG GGCAATCCGT ATTAGCTGCT
AATGCACGTA TTTCTATTTC CTATGCACTG ATACTGTTAG TGCCTATTTC TATTCTTGGG
GTTATCTCAG ACCAAGACTA TCGCGTCATT CTTGGCGCAT TAGGATTAAC GTTCAGCATC
GGCTTAGTTT TTTCCTACAC TAAAGCTGTA AAATTTACCC TTGATTCCAT CAATATTAAA
AATATGAATA TGGCGATGAG TGAGCAACTT CGCCAAGAAA AATACCAACT GGACAAAGTG
AACCGTGAGC TCAGCGAAGC CTACGATAAA CTTAACGCTG TAAATAGTAC CCTAGAGGAG
CAAGTCAGTA AGCGCACCGA GAAAATCGCC CAGCTGTCTT ATCTCGACCC ACTTACGCAA
TTGATGAACC GCAAATCCTT TACCCAAACT TTGAGTAAAT TAACCGCTAG GGCATCGCAA
AGTAATAGTG AGTTGGCTTT GTTGTTTATT GACCTTGATG GGTTCAAAAA AATTAACGAC
ACCATGGGTC ACCAAATGGG TGACAGTGTA TTGCAGGAAG TCACAAAACG GATAGGCGCA
TTTGCCGATC AAAATAAGCT CGGACGTTGG AACGGCGACG AGTTTTTAGT CGCACTACCT
TATAGTGATG CGCAAACCGC ACAAGCCATC GCCAGCGCGA TCATTACCAG TATTTCTCAG
GTGATTACGG TTAACAATAA CAGCGTGCAT TTAGGAGCAA CTGTGGGCAT TGCCATGTGC
CCCGAGCACA GCACTGAGGC GGCTGAACTT ATCCAATTCG CAGATTTAGT GATGTGTGAG
CAAAAGGCCA GTACAAATCG CACGCCCGCA TTGTTTAGCA ATGAACTTCA GCAAAAAGTG
CTCGACACAC AGGTTATTCT AGAAGGCCTA CAACAGGCCA CAGAGCGACG CCAACTGTAT
TTGTGCTACC AACCTATCAT GTCTGCAAAA GACAGCACCT TTTGTTCATT TGAAGCTCTG
TTAAGGTGGG ATTTTGCTGG TCGATTTATC GGGCCGGATG AATTTATCCC ATTAGCTGAG
AAGTCAGGAT TAATTAAAGA GATCGGGGCT TGGGTACTCA ACAGAGCATG CATGGATGCC
AGTCAATGGC AGCATGCCCA CAACGCTGCG GTATCAGTCA ATGTATCGGT TATTCAACTC
ATGGATGACA GTTTTATCCG AGCTTTAGAT AACGCACTGC GTAGTAGCGG ACTCAGCCCA
GAACGATTAC ATTTAGAGAT CACAGAATCT GTATTTGTGG ATAACAAAGT GAAGATAAAG
CAGCAGCTTG AAGCCATTCA AAAACGCAAA GTACTGGTGT CAATTGATGA TTTTGGGACC
GGCTATTCTT CATTATCACA ACTACAATCC TTGGCTGTGA ACCAAGTGAA AATTGATAAA
TCATTTGTTG ATAACATGGA GAACAACGGC GAAGCCATTA TTCGCGCGAC CTTATTTATC
GCCAGTGAGC TAAACTGCAA AACAGTCGCT GAGGGTGTCG AAACACTAGA GCAGGCCAAA
GCACTGAAAG CCATGGGAGT AGATTATTTA CAAGGCTACT ATTTTGCTAG ACCTATGCCT
AATGAACAGC TTATCGAATG GCAAAACCCA GTCACGGATG TAACCGTCAC CGAGTAA
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| Protein sequence | MRVSNTSAEL HALNSQDAAK LLYSNTGAAC SITFAASSVL AFGFLGTEVS EIKQVWWGCM
LVVLTLRLID GIYWQRKIKP RNDFDGEAAQ RRFGIGCIAT AFVWACLPIL TFDQVNLLEF
ATMIIVLSSM AAGGQSVLAA NARISISYAL ILLVPISILG VISDQDYRVI LGALGLTFSI
GLVFSYTKAV KFTLDSINIK NMNMAMSEQL RQEKYQLDKV NRELSEAYDK LNAVNSTLEE
QVSKRTEKIA QLSYLDPLTQ LMNRKSFTQT LSKLTARASQ SNSELALLFI DLDGFKKIND
TMGHQMGDSV LQEVTKRIGA FADQNKLGRW NGDEFLVALP YSDAQTAQAI ASAIITSISQ
VITVNNNSVH LGATVGIAMC PEHSTEAAEL IQFADLVMCE QKASTNRTPA LFSNELQQKV
LDTQVILEGL QQATERRQLY LCYQPIMSAK DSTFCSFEAL LRWDFAGRFI GPDEFIPLAE
KSGLIKEIGA WVLNRACMDA SQWQHAHNAA VSVNVSVIQL MDDSFIRALD NALRSSGLSP
ERLHLEITES VFVDNKVKIK QQLEAIQKRK VLVSIDDFGT GYSSLSQLQS LAVNQVKIDK
SFVDNMENNG EAIIRATLFI ASELNCKTVA EGVETLEQAK ALKAMGVDYL QGYYFARPMP
NEQLIEWQNP VTDVTVTE
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