| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0564 |
|---|
| Symbol | |
|---|
| ID | 4174011 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | + |
|---|
| Start bp | 653254 |
|---|
| End bp | 653808 |
|---|
| Gene Length | 555 bp |
|---|
| Protein Length | 184 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 638053566 |
|---|
| Product | 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase |
|---|
| Protein accession | YP_660147 |
|---|
| Protein GI | 109896892 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1778] Low specificity phosphatase (HAD superfamily) |
|---|
| TIGRFAM ID | [TIGR01662] HAD-superfamily hydrolase, subfamily IIIA
[TIGR01670] 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.733315 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGCGACG TTAATACGTT ATATGGTGCT AAGTCATCTT CATTAATGGA CAAGCTTTCC
CGCATTAAAT TACTGACTTG TGATGTAGAT GGGGTGTTCT CTGACGGGCG CATATACATG
GGCAATGACG GCGAAGAATT GAAAGCGTTT CATACTCGTG ACGGTTTTGG AGTTAAAGCC
TTATTAAACA TTGGTGTGCA CGTTGCGGTT ATTACCGGAC GTGAATCAAA AATAGTGCAC
AAACGCATGT CAGCGTTAGG GGTCGAGCAT ATTATTCAAG GTTGTGAACA GAAAAACGAT
GCGCTTTTGG CGTTGCAGCG CCAGTTAAAT ATAGGCAAAG ACGCTACCGC ATCCATCGGG
GATGATATGC CCGACGTGGG AATGTTTACC TTGAGTAACG TCGCCGTAGC GACACACGAT
GCCCATCCAT TTGTACAGAA ACAAGCTCTG TATATTACCC AAATCAATGG GGGCTTTGGT
GCTGTACGCG AAGTTTGCGA CCTAATTTTG CACGCCAAAG GCAAGTTAAA CAAAGTCAGT
GGTAGTAGCG TATGA
|
|---|
| Protein sequence | MGDVNTLYGA KSSSLMDKLS RIKLLTCDVD GVFSDGRIYM GNDGEELKAF HTRDGFGVKA
LLNIGVHVAV ITGRESKIVH KRMSALGVEH IIQGCEQKND ALLALQRQLN IGKDATASIG
DDMPDVGMFT LSNVAVATHD AHPFVQKQAL YITQINGGFG AVREVCDLIL HAKGKLNKVS
GSSV
|
|---|
| |