| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0395 |
|---|
| Symbol | |
|---|
| ID | 4173485 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | - |
|---|
| Start bp | 450118 |
|---|
| End bp | 452259 |
|---|
| Gene Length | 2142 bp |
|---|
| Protein Length | 713 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 638053393 |
|---|
| Product | pyridine nucleotide-disulphide oxidoreductase dimerisation region |
|---|
| Protein accession | YP_659979 |
|---|
| Protein GI | 109896724 |
|---|
| COG category | [C] Energy production and conversion
[S] Function unknown |
|---|
| COG ID | [COG0398] Uncharacterized conserved protein
[COG1249] Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATAGTA AACGTGCAAT ATTAGTCATC GTCATTGCTG CGCTCATCGC CAGCTTTTTT
GTCTTTGACC TGAATCAATA CCTCACACTT GAGAGCCTTA AAAACAATCA GCAAGATCTT
GCGCAATATA TTGAAGCGAA CTGGTTGGTC GCATTTGTTG GCTACTTGGC CATTTATGCT
GCAGCCACCG CCTTGAGTGT ACCTGGGGCA GCTATTCTTA CATTAGGCGC AGGTGCCTTA
TTCGGCTTCG GCTGGGGCTT ATTATTAGCT TCATTCGCTT CAAGCATTGG TGCAACGTTG
GCCTTCTTAG CGTCGCGTTT CTTATTGCGG GATTGGGTAA AAAGTACCTT CTCGAAAAAG
CTAGAATCTA TCGATAAAGG CATCGAAAAA GACGGTGCAT TCTACTTATT GAGCTTACGT
TTAGTGCCTA TCTTCCCGTT TTTTATCATC AACCTAGTGA TGGGTGTGAC GGGTATAAAA
ACATGGACTT ATTACTGGGT TAGCCAACTA GGCATGTTGA TTGGCACTGC CGTTTATGTG
AATGCAGGTA CTCAATTAGT CGAAATCAAC CAGTTGTCAG ACATTATCTC AACGGATTTA
ATCCTTTCGT TTGTCCTGTT AGGCATATTC CCGATTTTGG CTAAGTTTAT TTTAAGTGCG
CTGCAACAAC GCCGTGTTTA CAAAGGCTGG AAAAAACCCA AGAAATTCGA TCGTAACCTA
GTGGTTATCG GTGCAGGTTC GGCTGGTTTG GTAACGGCTT ATATTGCCGC GGCCATTAAA
TCTAAAGTGA CCTTGGTTGA GCGTCATAAA ATGGGCGGCG ACTGTTTGAA TACGGGTTGC
GTGCCTTCTA AAAGTATATT GCACGCCAGT AAGCTAGCGC ATATTCATCA CACTTCGCAA
AATGCGGGTG TCACCTATGA TGCCCCAAAA ATTGATTTTA AAGCGGTCAT GAACAAGGTT
CACAGCGTGA TTAAATCCAT TGAGCCGCAC GATTCTGTTG AGCGTTATGA ATCGCTGGGA
GTGAATGTCG CCATAGGTAA TGCTACCATC GTGTCGCCTT GGCAGGTGGA TATTCAAACC
GAGAACGGTG TTGAATCATT AACCACGCGC AACATTGTTA TTGCCACAGG CGCCCGTGCA
TTTGTACCAG ATATTCCAGG TTTGAAAGAC ATCGACTATT TAACCGCTGA TAACCTTTGG
GAAATCACCG AGCAGCCTAA ACGTATGATA GTACTAGGCG GCGGCCCAAT TGGTTGCGAA
CTGTCTCAAG CATTTGGTCG TTTAGGCACC CATGTCACGC AAATCGAACG CGGCGACCAA
GTATTGAGCA AAGAAGACCC AGATGCAGCG AAGCACTTAC AAATTCAACT CGAAAAAGAC
GGCATCGACT TGCGCCTGAA CACCAGCGCC ATGGCAGTTG AAACCACCAG CGAAGGCAAT
GTGTTGGTGG TTGAGTTTGA AGGTAAAGAA GAGCGTATCC CGTTCGATAA GATATTGGTG
GCTGTGGGTC GCCAAGCGAA CCTAACGGGC TTCGGTTTAG AAAAACTTGG TATCGAGACT
GACCGTACTG TTATCACCAA TGACTTTTTA CAAACCAAGT ACCCAAATAT TTTGGCGGCA
GGCGATGTCG CCGGGCCTTA TCAGTTTACT CACACCGCCA GTCACCAAGC TTGGTATGCA
GCGGTCAACG CGTTATTTAG ACCCTTTAAA ATATTTAAGG TGGACTACAG TGTTATTCCT
TGGGCAACCT TTGCGGAGCC AGAAATTGCC ACGGTAGGGT TAAATGAAAT GTCTGCTAAG
CAACAAGGCA TCGAAGTAGA GGTCACACGT TACGATATTG GCGGTCTTGA CCGTGCATTA
GCTGACGATC ATGCACGGGG TTTTGTTAAA GTGCTCACTA AGCCTGGTAA AGATAAGATT
TTGGGTGCCA CCATAGTCGG TGCCAATGCG GGTGAATTAC TGGCAGAGTT CGTTTTAGCC
ATGAAACACG GCCTTGGTTT AAACAAGATT TTGGGGACTA TCCATATTTA CCCGACTATG
GCTGAAGCGA ATAAAAACGT CGCAGGGAAC TGGAAGAAAG ATCACGCACC GCAAAAAGTA
CTCGACTTCC TTGAACGCTT CCACACGTGG CGTCGCAAGT AA
|
|---|
| Protein sequence | MNSKRAILVI VIAALIASFF VFDLNQYLTL ESLKNNQQDL AQYIEANWLV AFVGYLAIYA
AATALSVPGA AILTLGAGAL FGFGWGLLLA SFASSIGATL AFLASRFLLR DWVKSTFSKK
LESIDKGIEK DGAFYLLSLR LVPIFPFFII NLVMGVTGIK TWTYYWVSQL GMLIGTAVYV
NAGTQLVEIN QLSDIISTDL ILSFVLLGIF PILAKFILSA LQQRRVYKGW KKPKKFDRNL
VVIGAGSAGL VTAYIAAAIK SKVTLVERHK MGGDCLNTGC VPSKSILHAS KLAHIHHTSQ
NAGVTYDAPK IDFKAVMNKV HSVIKSIEPH DSVERYESLG VNVAIGNATI VSPWQVDIQT
ENGVESLTTR NIVIATGARA FVPDIPGLKD IDYLTADNLW EITEQPKRMI VLGGGPIGCE
LSQAFGRLGT HVTQIERGDQ VLSKEDPDAA KHLQIQLEKD GIDLRLNTSA MAVETTSEGN
VLVVEFEGKE ERIPFDKILV AVGRQANLTG FGLEKLGIET DRTVITNDFL QTKYPNILAA
GDVAGPYQFT HTASHQAWYA AVNALFRPFK IFKVDYSVIP WATFAEPEIA TVGLNEMSAK
QQGIEVEVTR YDIGGLDRAL ADDHARGFVK VLTKPGKDKI LGATIVGANA GELLAEFVLA
MKHGLGLNKI LGTIHIYPTM AEANKNVAGN WKKDHAPQKV LDFLERFHTW RRK
|
|---|
| |