Gene Patl_0391 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_0391 
Symbol 
ID4173481 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand- 
Start bp445651 
End bp446331 
Gene Length681 bp 
Protein Length226 aa 
Translation table11 
GC content46% 
IMG OID638053389 
ProductABC transporter related 
Protein accessionYP_659975 
Protein GI109896720 
COG category[R] General function prediction only 
COG ID[COG4136] ABC-type uncharacterized transport system, ATPase component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCTGCGCA TCAATAATTG CCAAATAAAC ACTGTTAGTG GGCAGATTTC CTTGCCCGAT 
ATAACACTCG AGCAAGGTGA GTTACTGGTA CTTACTGGCC CAAGCGGTAT GGGCAAGTCG 
ACATTTTTGC ACTGGTTGTT AGGTGATAAG ATTCAGCATG CCAACATCAG TGGTGAAATT 
ATCCTGAACG AACAAGCGAT TAACGACCTG AACGTTGAGC AGCGGGGCAT CGGTTTATTA 
ATGCAAGACG TGCATCTTTT TCCCCATTTG AATGTGGTAG ACAATATCTG CTTTGCACTG 
CCCACAGCGG TTCAAAATCA GCAAGGTAAA AAACAGAATA AACAGCAGCG CCGTAAAACC 
GCAATAAATA TGCTCGATAA GATTGAGCTG GGTTATGTGG CTGAACATTT CAGCGATCAA 
TTAAGTGGTG GCGAGCGCTC TCGCGTTGGC TTGGTGCGTG CGCTGGCAAA TCAACCACAA 
GCCTTATTGA TGGATGAACC CTTCGCTGCA CTTGACCCAA ACACGAATGC TAAGGTAAGT 
CAGTGGGCAT TTGAGCAATT GCAACAGCAA GGAGTGCCTA GCATCATGGT GAGTCACGAT 
ATCGACAATA TTCCTGCTCA TGCTCAACAT ATAGATTTAG GGGCCTATTT TCAAAGCGCA 
TCACACGCTA AAAGCGACTA A
 
Protein sequence
MLRINNCQIN TVSGQISLPD ITLEQGELLV LTGPSGMGKS TFLHWLLGDK IQHANISGEI 
ILNEQAINDL NVEQRGIGLL MQDVHLFPHL NVVDNICFAL PTAVQNQQGK KQNKQQRRKT 
AINMLDKIEL GYVAEHFSDQ LSGGERSRVG LVRALANQPQ ALLMDEPFAA LDPNTNAKVS 
QWAFEQLQQQ GVPSIMVSHD IDNIPAHAQH IDLGAYFQSA SHAKSD