| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0341 |
|---|
| Symbol | |
|---|
| ID | 4173164 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | - |
|---|
| Start bp | 399910 |
|---|
| End bp | 400632 |
|---|
| Gene Length | 723 bp |
|---|
| Protein Length | 240 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 638053340 |
|---|
| Product | uroporphyrinogen III synthase HEM4 |
|---|
| Protein accession | YP_659926 |
|---|
| Protein GI | 109896671 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG1587] Uroporphyrinogen-III synthase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACTGTGC TGATATTCCG CCCAGAGCAA AAATGCGCCC CAAGCGCAGC GCGCTTTATT
ACTGCGGGTT TACCTGCGGT TGGCGTCGGC CTGATTAGTA CACAAGCCAG TCAAGAAGCT
CTGAGCTCAT TGCCGAGCGC ACTTGGCTCT CTATCCTCTG GTGACGGTAT TATTGTAACC
AGTACGGTAG TCAGTCAACT ATTGGCGCAG CAGCGCATTG AACTACCAAA TTCAGCGACA
ATTTTTGCCG TTGGTAGCAG TACTGCCCAA GGTCTACGGG CACAAGGTTA CGACGTGACT
GTGCCTCTCG TGCCTACCAC CGAAGGCTTG TTAGCGCTCT CCCCCCTAAA AGAAATCGCT
GGGCATACAG TCGTGATTTT AAAAGGCCAA GGCGGCCGTG AAGATTTAGC CCAACAACTT
ACCCAGCGCG GCGCTACTGT TTTGCTAGCA GATATTTATC AAAGGATAAA AATTGCCACG
CCTAAAGCCA CACAAGAGTG GCAAGCAGAG CAGATTAGAT GCATCATTGC TACCAGTGGT
GAAATAATAG ATACGGCGTT TGAGCATTTC GATGCTAAGT GGCTACAATC TTTACCTTGG
ATTGTGGTAA GCCCACGAAC TGAACAAATT GCCGTAAAAC AAGGTATAAA GACAATATTT
GTCAGCGATG ACGCTAGCGA CCAGGCACTT ATTCGCCGTG CCAAGGAATT TTTGGAGCAT
TAA
|
|---|
| Protein sequence | MTVLIFRPEQ KCAPSAARFI TAGLPAVGVG LISTQASQEA LSSLPSALGS LSSGDGIIVT
STVVSQLLAQ QRIELPNSAT IFAVGSSTAQ GLRAQGYDVT VPLVPTTEGL LALSPLKEIA
GHTVVILKGQ GGREDLAQQL TQRGATVLLA DIYQRIKIAT PKATQEWQAE QIRCIIATSG
EIIDTAFEHF DAKWLQSLPW IVVSPRTEQI AVKQGIKTIF VSDDASDQAL IRRAKEFLEH
|
|---|
| |