| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0303 |
|---|
| Symbol | |
|---|
| ID | 4172897 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | - |
|---|
| Start bp | 353189 |
|---|
| End bp | 353848 |
|---|
| Gene Length | 660 bp |
|---|
| Protein Length | 219 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 638053302 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_659889 |
|---|
| Protein GI | 109896634 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3495] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.965134 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCAGTA AAATTAAAGT GACTGCTATT TTGCTGCTCT TTTTTGGAGC GGGTATCTTG
CTAACCAAAC TGCCGGAACG CAATTGGTCG ATGCAATTAA GTAAACTGTT TTCCAGCTCT
GTGCTGTACG TTAGCCCTGA TACTGAATTG CGCGAACGCT TAGCTAACGA TGAAATAACC
CCTTTAGGCT GGGGAGAACT GTTACCCAAG TCAGACAAAG AAGTGCTGGC AAAATATCAA
TCAAGTAGCG ACAAGTCGCT GAGCGAACAA GTAACCCTTT CTTTGCAAGC TACCACCAAC
CAGCGCTACC AATCAGCCTT ATACTCCACT AACGTGGTCG AAGACGCCAT AGGTAAAGCG
GTCAGTATTT CAGGTTATAT GGTACCTATC GACTTGAACG AAGACAGAAG CGTTAAACGC
TTTTTTTTGG TGCCTTACTA CGGCGCATGC ATTCACTACC CGCCACCCCC GCCGAATCAG
ATGATTTATG TGGATTTGAT CGACGGCTTT TCAAAGATCA TGATGAGCCA AGCCTTTACC
CTCACCGGCG TATTAGAAAA AGGCTTGTTT GAAGATCATC AAGGCACATC GGCATACATT
CTAAACGTGT CACAAATTGA AAAGTTTAAC GAGCAACCCG ACGAATATCG CACGCACTAG
|
|---|
| Protein sequence | MSSKIKVTAI LLLFFGAGIL LTKLPERNWS MQLSKLFSSS VLYVSPDTEL RERLANDEIT
PLGWGELLPK SDKEVLAKYQ SSSDKSLSEQ VTLSLQATTN QRYQSALYST NVVEDAIGKA
VSISGYMVPI DLNEDRSVKR FFLVPYYGAC IHYPPPPPNQ MIYVDLIDGF SKIMMSQAFT
LTGVLEKGLF EDHQGTSAYI LNVSQIEKFN EQPDEYRTH
|
|---|
| |