| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0126 |
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| Symbol | |
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| ID | 4172153 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 150012 |
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| End bp | 151772 |
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| Gene Length | 1761 bp |
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| Protein Length | 586 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 638053125 |
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| Product | glycoside hydrolase family protein |
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| Protein accession | YP_659712 |
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| Protein GI | 109896457 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG4724] Endo-beta-N-acetylglucosaminidase D |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0534718 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATGCTCA AAACCCTGGG TAGCCTATTG CTGTGCACCG CATTTTTTTG TCAGGCACAA
AGTACTGATA TTCGAGCTAA TCAAGCGCCA TTTGCATTAA CCCTTGAGCA AGCCATGAAC
TGGACTGCAC AAAGTGATTT TACCTCTGCA CAGAATATCT CTAAACAGCC GTTAGCTAGA
CGTTTTGGTG CACAGTTAGA CCCCAGTAGA GCAAATTTAG ATACGCAAGT TAAGGTGCTC
TACGCGCCTG ACGGTATGAA CAACTTTGCA AATTACCTCG ATACACAAGC CACATTTAAT
TTGTATAACT TTACTCACTG GTCGCAAATC GATGTGCTGA ACTGGTTTGC CGGTACGGCT
GATCATGTGG TGCAAATACC TGCTCGGCCT TGGGTTGACA CCGCGCATCG AAATGGCGTC
AAGGTTATCG GCTCGATTTT CTTAGCCATC GCTAAATACG GCGGCAGTCC CGATACCGCA
GAATCTTTGC TCAAACAGGA TGCTCAGGGG CGATTTATTA TGGCCCATAG ACTTGTCGAT
ATAGCCCAAT ATTATGGTTT TGACGGTTGG CTAATGAACC AAGAAACTAA CTTGACCGCC
ATTAAAGATG CAGAAAATGA ATTAGTCGAA GGGCAAAAAG ACATTCGTCG CGGTGCAGAA
CTTGGCCAGA AAATGTTGGC GTTTATGCAG TATTTAACGG CTATTGCCCC CCAAGGAATG
GAGATCCATT GGTATGACTC CATGCTGGAA AACGGTGAAG TGCGCTGGCA AAACCAGTTG
AATGAGAAGA ACCAAGCATT TTTACACCAG GGTGTATCCA GTGCCGATGC CATGTTTATG
AATTACTGGT GGAACAAAGC CATGGTCGAA CGCTCTGTCT CACTTGCCCA AGCGTTGGGG
CGTTCTGGCT ACGACTTATA TTTTGGCGCT GATTTATGGC CAAGTCGCAA TGCACAGCGC
GCTTTTAGTA AGACCCAGTG GTTAGAGGAT CTATTTGATA GTGATACCGA GCAAGGGCTA
ACCTCCATTG CGCTATTCGC ACCGAACTTC AATTTTAATT TCAGTGGCGA ACCTCACACA
CCTATTTTTA GCCAATTTAA AGACGATCCC CAAGACTCGC TACGGTTTTA CCAAACCGAG
CAACGCTTGT TTGTGGGGGA TGATTTAAAC CTTGCCAATA ATGATCTTAA TGGTTGGCCG
GGCATAGGAC GCTACGTACC GGCAAAAACC ACTGTGAATT CGTTACCGTT CGAAACGTAT
TTTAATACTG GCCAGGGTAA AAAACTGATC GAAAACGGCC AGCAAGTGTT AAGTGGCTGG
ACTGATATGA GCAAGCAGGA TCTGCTGCCC ACTTGGCAAT TTGCCGTGTA TGGCAACCCG
TCAATGACGG TAGCGTATGA CTTTGAAGAG GTGTTTTCTG GTGGCAGCTC TTTGGTTTTC
ACAGGCTCGC TTAGCGCGCA AGAAACACGC ATTCCTTTGT ACCAGACTCA TTTGGTACTG
GGCAAAAACA ACACAGCGAC GCTAACCCTA AAAGGCGATG CCAGTGCCCT GTCATTGTAT
GTGGAAACTG CTGACGGTAA GCGACATAGG TTCGCGTTAG ATGCGATTAC CCCAAGTGTC
AGTCAACAAG ATTGGCGCTC CTATGAAGTA TCACTTAGTG CGCTCGCAAA GCAGTCTATT
ACTCAACTCG GTATGTTGTT TAGTGACGGT ACGAGCGAGG AAAATGTGAA TGTGAATTTA
GGGCAATTGG CGATCCGTTA A
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| Protein sequence | MMLKTLGSLL LCTAFFCQAQ STDIRANQAP FALTLEQAMN WTAQSDFTSA QNISKQPLAR
RFGAQLDPSR ANLDTQVKVL YAPDGMNNFA NYLDTQATFN LYNFTHWSQI DVLNWFAGTA
DHVVQIPARP WVDTAHRNGV KVIGSIFLAI AKYGGSPDTA ESLLKQDAQG RFIMAHRLVD
IAQYYGFDGW LMNQETNLTA IKDAENELVE GQKDIRRGAE LGQKMLAFMQ YLTAIAPQGM
EIHWYDSMLE NGEVRWQNQL NEKNQAFLHQ GVSSADAMFM NYWWNKAMVE RSVSLAQALG
RSGYDLYFGA DLWPSRNAQR AFSKTQWLED LFDSDTEQGL TSIALFAPNF NFNFSGEPHT
PIFSQFKDDP QDSLRFYQTE QRLFVGDDLN LANNDLNGWP GIGRYVPAKT TVNSLPFETY
FNTGQGKKLI ENGQQVLSGW TDMSKQDLLP TWQFAVYGNP SMTVAYDFEE VFSGGSSLVF
TGSLSAQETR IPLYQTHLVL GKNNTATLTL KGDASALSLY VETADGKRHR FALDAITPSV
SQQDWRSYEV SLSALAKQSI TQLGMLFSDG TSEENVNVNL GQLAIR
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