Gene Patl_0109 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_0109 
Symbol 
ID4171791 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand
Start bp124838 
End bp125812 
Gene Length975 bp 
Protein Length324 aa 
Translation table11 
GC content48% 
IMG OID638053108 
ProductWD-40 repeat-containing protein 
Protein accessionYP_659695 
Protein GI109896440 
COG category[R] General function prediction only 
COG ID[COG2319] FOG: WD40 repeat 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0000219456 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGACCGTCT TGTTACGATT AAGTTTAATT TTATTATTGC TAACTGGCTG TAGCGGGCAA 
TCGTCAACAC CAGTAACCTC GTGGCGACAT GCTGATGATG GCGCCTATGC CGCTGATATA
TCAGCGGATG CGTCGCTAGC TGTGGTGTCG AGCGTTACGG GGGGCATAGC GGTTTGGGAC
CTGAAAAAAA ATGAAAAACG CTACACTTGG CAGCACCAAG GCGAGGGAAA TAATTTAGTC
GCTAATGTAC ACATCGCTTT TGATAATAGT TATGTGGTGA CATCTGACCG TGACGCCTTT
GCCCTTTGGA ATGTGGCCAG TGGCGAGCCA GAAGGCTTCT GGCGTATCGA TGAGTCAAGT
ATTCGTGATG TGGCGGTATC AAACCAAGGG CGGGGGATAC TGGTTGGCCG AGGCAATGGT
AAGGTAATGT TTTTTGAGCC CAAAACCGGT CGGCGTTTAG AGTTTTTAGG GCATCAAGAA
AAAGTGAACA GTGTGGATTT GTCTCCTAAT GGTTTTTACG CCCTTACCGG TGGCAATGAT
TACACTGCTT ATCTGTGGGA TACCCGAACA GGTCAGGTTA TTCATAGTTT CACCCATTCA
AGTCGCGTGA CCAAAGTGGC GTTAGACGAT GAAGGGCGCT ACGGCTTTAC CGCCGATAGT
AAGCGTGATG CTAGGGTGTG GGACTTAGTC ACAGGTGAAG AAGTGAGTAA TTTGCATTAC
CTTGCCCGGC AGAAAATATT CAGCAGCGCC GCGTTTTCAC AAGACGGCCA GTACTTGTTA
ACGGGCTCAC CCGCTAAGCG ATTAAATTTG TGGCGCGTGA CCGATGGAAA AGAAATACAA
GAATGGCAGG TGTCACCCAG AGAAGGCAGC CGTCCGCAGA CCGCAGTGGT ATACGGGGTG
GGATTTGCTA AAGACAAACA AATTGTGTCA GAAAGCAGCA GTGGTTTAGC TGAATTTTGG
CAAATAAATC AGTAA
 
Protein sequence
MTVLLRLSLI LLLLTGCSGQ SSTPVTSWRH ADDGAYAADI SADASLAVVS SVTGGIAVWD 
LKKNEKRYTW QHQGEGNNLV ANVHIAFDNS YVVTSDRDAF ALWNVASGEP EGFWRIDESS
IRDVAVSNQG RGILVGRGNG KVMFFEPKTG RRLEFLGHQE KVNSVDLSPN GFYALTGGND
YTAYLWDTRT GQVIHSFTHS SRVTKVALDD EGRYGFTADS KRDARVWDLV TGEEVSNLHY
LARQKIFSSA AFSQDGQYLL TGSPAKRLNL WRVTDGKEIQ EWQVSPREGS RPQTAVVYGV
GFAKDKQIVS ESSSGLAEFW QINQ