| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0109 |
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| Symbol | |
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| ID | 4171791 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 124838 |
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| End bp | 125812 |
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| Gene Length | 975 bp |
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| Protein Length | 324 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 638053108 |
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| Product | WD-40 repeat-containing protein |
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| Protein accession | YP_659695 |
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| Protein GI | 109896440 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2319] FOG: WD40 repeat |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.0000219456 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | TTGACCGTCT TGTTACGATT AAGTTTAATT TTATTATTGC TAACTGGCTG TAGCGGGCAA
TCGTCAACAC CAGTAACCTC GTGGCGACAT GCTGATGATG GCGCCTATGC CGCTGATATA
TCAGCGGATG CGTCGCTAGC TGTGGTGTCG AGCGTTACGG GGGGCATAGC GGTTTGGGAC
CTGAAAAAAA ATGAAAAACG CTACACTTGG CAGCACCAAG GCGAGGGAAA TAATTTAGTC
GCTAATGTAC ACATCGCTTT TGATAATAGT TATGTGGTGA CATCTGACCG TGACGCCTTT
GCCCTTTGGA ATGTGGCCAG TGGCGAGCCA GAAGGCTTCT GGCGTATCGA TGAGTCAAGT
ATTCGTGATG TGGCGGTATC AAACCAAGGG CGGGGGATAC TGGTTGGCCG AGGCAATGGT
AAGGTAATGT TTTTTGAGCC CAAAACCGGT CGGCGTTTAG AGTTTTTAGG GCATCAAGAA
AAAGTGAACA GTGTGGATTT GTCTCCTAAT GGTTTTTACG CCCTTACCGG TGGCAATGAT
TACACTGCTT ATCTGTGGGA TACCCGAACA GGTCAGGTTA TTCATAGTTT CACCCATTCA
AGTCGCGTGA CCAAAGTGGC GTTAGACGAT GAAGGGCGCT ACGGCTTTAC CGCCGATAGT
AAGCGTGATG CTAGGGTGTG GGACTTAGTC ACAGGTGAAG AAGTGAGTAA TTTGCATTAC
CTTGCCCGGC AGAAAATATT CAGCAGCGCC GCGTTTTCAC AAGACGGCCA GTACTTGTTA
ACGGGCTCAC CCGCTAAGCG ATTAAATTTG TGGCGCGTGA CCGATGGAAA AGAAATACAA
GAATGGCAGG TGTCACCCAG AGAAGGCAGC CGTCCGCAGA CCGCAGTGGT ATACGGGGTG
GGATTTGCTA AAGACAAACA AATTGTGTCA GAAAGCAGCA GTGGTTTAGC TGAATTTTGG
CAAATAAATC AGTAA
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| Protein sequence | MTVLLRLSLI LLLLTGCSGQ SSTPVTSWRH ADDGAYAADI SADASLAVVS SVTGGIAVWD
LKKNEKRYTW QHQGEGNNLV ANVHIAFDNS YVVTSDRDAF ALWNVASGEP EGFWRIDESS
IRDVAVSNQG RGILVGRGNG KVMFFEPKTG RRLEFLGHQE KVNSVDLSPN GFYALTGGND
YTAYLWDTRT GQVIHSFTHS SRVTKVALDD EGRYGFTADS KRDARVWDLV TGEEVSNLHY
LARQKIFSSA AFSQDGQYLL TGSPAKRLNL WRVTDGKEIQ EWQVSPREGS RPQTAVVYGV
GFAKDKQIVS ESSSGLAEFW QINQ
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