Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_0109 |
Symbol | |
ID | 4171791 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | + |
Start bp | 124838 |
End bp | 125812 |
Gene Length | 975 bp |
Protein Length | 324 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 638053108 |
Product | WD-40 repeat-containing protein |
Protein accession | YP_659695 |
Protein GI | 109896440 |
COG category | [R] General function prediction only |
COG ID | [COG2319] FOG: WD40 repeat |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.0000219456 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGACCGTCT TGTTACGATT AAGTTTAATT TTATTATTGC TAACTGGCTG TAGCGGGCAA TCGTCAACAC CAGTAACCTC GTGGCGACAT GCTGATGATG GCGCCTATGC CGCTGATATA TCAGCGGATG CGTCGCTAGC TGTGGTGTCG AGCGTTACGG GGGGCATAGC GGTTTGGGAC CTGAAAAAAA ATGAAAAACG CTACACTTGG CAGCACCAAG GCGAGGGAAA TAATTTAGTC GCTAATGTAC ACATCGCTTT TGATAATAGT TATGTGGTGA CATCTGACCG TGACGCCTTT GCCCTTTGGA ATGTGGCCAG TGGCGAGCCA GAAGGCTTCT GGCGTATCGA TGAGTCAAGT ATTCGTGATG TGGCGGTATC AAACCAAGGG CGGGGGATAC TGGTTGGCCG AGGCAATGGT AAGGTAATGT TTTTTGAGCC CAAAACCGGT CGGCGTTTAG AGTTTTTAGG GCATCAAGAA AAAGTGAACA GTGTGGATTT GTCTCCTAAT GGTTTTTACG CCCTTACCGG TGGCAATGAT TACACTGCTT ATCTGTGGGA TACCCGAACA GGTCAGGTTA TTCATAGTTT CACCCATTCA AGTCGCGTGA CCAAAGTGGC GTTAGACGAT GAAGGGCGCT ACGGCTTTAC CGCCGATAGT AAGCGTGATG CTAGGGTGTG GGACTTAGTC ACAGGTGAAG AAGTGAGTAA TTTGCATTAC CTTGCCCGGC AGAAAATATT CAGCAGCGCC GCGTTTTCAC AAGACGGCCA GTACTTGTTA ACGGGCTCAC CCGCTAAGCG ATTAAATTTG TGGCGCGTGA CCGATGGAAA AGAAATACAA GAATGGCAGG TGTCACCCAG AGAAGGCAGC CGTCCGCAGA CCGCAGTGGT ATACGGGGTG GGATTTGCTA AAGACAAACA AATTGTGTCA GAAAGCAGCA GTGGTTTAGC TGAATTTTGG CAAATAAATC AGTAA
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Protein sequence | MTVLLRLSLI LLLLTGCSGQ SSTPVTSWRH ADDGAYAADI SADASLAVVS SVTGGIAVWD LKKNEKRYTW QHQGEGNNLV ANVHIAFDNS YVVTSDRDAF ALWNVASGEP EGFWRIDESS IRDVAVSNQG RGILVGRGNG KVMFFEPKTG RRLEFLGHQE KVNSVDLSPN GFYALTGGND YTAYLWDTRT GQVIHSFTHS SRVTKVALDD EGRYGFTADS KRDARVWDLV TGEEVSNLHY LARQKIFSSA AFSQDGQYLL TGSPAKRLNL WRVTDGKEIQ EWQVSPREGS RPQTAVVYGV GFAKDKQIVS ESSSGLAEFW QINQ
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