Gene Pars_1872 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPars_1872 
Symbol 
ID5055761 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePyrobaculum arsenaticum DSM 13514 
KingdomArchaea 
Replicon accessionNC_009376 
Strand
Start bp1676234 
End bp1677124 
Gene Length891 bp 
Protein Length296 aa 
Translation table11 
GC content55% 
IMG OID640469418 
ProductROK family protein 
Protein accessionYP_001154075 
Protein GI145592073 
COG category[G] Carbohydrate transport and metabolism
[K] Transcription 
COG ID[COG1940] Transcriptional regulator/sugar kinase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones35 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCTCTGT ATCTAGGCGT TGATGTGGGA GCGACGTGGA CGAGGGCCGT ATTGGTGGAT 
GACCATGCAA ATGTGGTAAA CAGGTTGAAA ATTAGAACCA GTAAAAACCC CCTTGCCGAC
GTCGCCGAGG CAGTAGCGGG GTGGAAGTTT GACAGTATAG GCGTGGGATC CATCGGGCCT
ATGGACTTGA GAAGCGGATG GGTTACTAAC TCGCCTAATT CTCCAGCTAG GCAGTTCCCA
CTAGTCGAGC CGTTGAAAAA ACTGAGCAAA CCAGTAGTTG TTGCAAACGA CTGCGTCGCA
GCAGTGTGGG GAGAGTATGT CTTTAAACAC GGCGTCGACA ACATGGTGTA CTTAACTCTG
TCCACTGGCG TTGGGGTTGG CGCAGTGGTT AACGGCACTC TACTGCTGGG CAAAGACGGC
AACGCTCACG AACTGGGACA CGCCGTGATA GATTTCCGTG CGGGTCGCCA GTGCGGATGC
GGCGGCTTTG GCCACTTCGA GGCATATATT GGTGGGGCGA ATGTGCCCAA GTGGTTCCGC
GAAGTCTCCG GCGAGGCGGT AGCAGACGCC GCCGAGGTGT TCAGTAGATA TAGAGCTGGG
GATTCAAAGG CGGTGGAGTT TGTCAACCTC TGGCTCGACG CCTTGGCCGC GGGCATAGCC
ACAGTGGTGG CGGCCTACGA CCCCGAGCTG TTGATAGTGG GGGGATCAGT CGCCTTGAAC
AACTGGGATA TCATAATCCC CAAGCTTTCC CCGCGTTTGG CGAAATACTT AGGCGTGCGG
CCTCCCAAAA TTCTCCAGGC ATCTTTTGGA GACGACGAAG TGGCGATAGG CGCCGCCGCC
CTCGCTTATA AAACCCCAGA TAGCTTGAAA AAGTTCGGAT ATCCTAGATA G
 
Protein sequence
MPLYLGVDVG ATWTRAVLVD DHANVVNRLK IRTSKNPLAD VAEAVAGWKF DSIGVGSIGP 
MDLRSGWVTN SPNSPARQFP LVEPLKKLSK PVVVANDCVA AVWGEYVFKH GVDNMVYLTL
STGVGVGAVV NGTLLLGKDG NAHELGHAVI DFRAGRQCGC GGFGHFEAYI GGANVPKWFR
EVSGEAVADA AEVFSRYRAG DSKAVEFVNL WLDALAAGIA TVVAAYDPEL LIVGGSVALN
NWDIIIPKLS PRLAKYLGVR PPKILQASFG DDEVAIGAAA LAYKTPDSLK KFGYPR