Gene Pars_1544 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPars_1544 
Symbol 
ID5054029 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePyrobaculum arsenaticum DSM 13514 
KingdomArchaea 
Replicon accessionNC_009376 
Strand
Start bp1399871 
End bp1400629 
Gene Length759 bp 
Protein Length252 aa 
Translation table11 
GC content58% 
IMG OID640469085 
Producthypothetical protein 
Protein accessionYP_001153750 
Protein GI145591748 
COG category[S] Function unknown 
COG ID[COG1650] Uncharacterized protein conserved in archaea 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value0.0140701 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGTACATAA TCATCGTCTC GCTCGCCGAC CCAGTTTCCC GCGCATTCCT CGAATTGATG 
GGGGATCTCC CTCTGGTGGA GACCAGGGGG GATCTAGAGA TAAGGAGACT CCGCGACACG
CCTGTGGTGG TGTACAGAGG GGAGCCCACC TCGTTCGACA AAGAGGATGT GCTACTCTCC
GTAGGCAAAC ACGCAGTGTT TATCTCCCGC CACGAGATGG CCAATCCGAG ACCTATATTC
ACGGTCCACA CGCCGGGAAG CTGGCCCGAC GTCTCGGTCT CTAACCCCCA CCTCGCCTCC
GCCGTTCTCC GAGCTCTATG CAACCGCCTC TACGAGCCCT TTGAATGCGC CTACGAGGCC
ACCCACCACA CGCCCAACAC GGCGCACATA TCGGCAACGT TTGTCGAGGT GGGTAGCACA
GACCGCGAGT GGGGGGATAG AAAAGCCGTC GGGACGCTCC TAGAGGCGTT GGAAGAAGTC
CTGAACTCCC CACTTGAGGA GCACACGCCC GCTATGGTCA TAGGCGACCT CCACTACACC
ACAGTTAAGG AGTCGGCGCT GAGGAAAGAA GTGGATATAG GGCATGTGGT GCCTAAGTAC
GTCGAAATAA CGCCCGCGGC TGTGGAAACA GCGTTGAGAA AACACACAGT GCCTATAAAG
AGGGCAATAC TCTTCAGGAA GAACGTGAAG AACCCGGCCA GGGGTGAGAT CCTGCAGATG
CTGAGAGATA GAGGAGTAGA GGTGGTGCTG AAGGGGTAG
 
Protein sequence
MYIIIVSLAD PVSRAFLELM GDLPLVETRG DLEIRRLRDT PVVVYRGEPT SFDKEDVLLS 
VGKHAVFISR HEMANPRPIF TVHTPGSWPD VSVSNPHLAS AVLRALCNRL YEPFECAYEA
THHTPNTAHI SATFVEVGST DREWGDRKAV GTLLEALEEV LNSPLEEHTP AMVIGDLHYT
TVKESALRKE VDIGHVVPKY VEITPAAVET ALRKHTVPIK RAILFRKNVK NPARGEILQM
LRDRGVEVVL KG