Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pars_1311 |
Symbol | |
ID | 5054157 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pyrobaculum arsenaticum DSM 13514 |
Kingdom | Archaea |
Replicon accession | NC_009376 |
Strand | + |
Start bp | 1184148 |
End bp | 1184681 |
Gene Length | 534 bp |
Protein Length | 177 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 640468857 |
Product | THUMP domain-containing protein |
Protein accession | YP_001153526 |
Protein GI | 145591524 |
COG category | [R] General function prediction only |
COG ID | [COG1818] Predicted RNA-binding protein, contains THUMP domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.011341 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 33 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGAGCTGGA ACTTAGTAGT GGCGACGGGC TGGAGGCTGG AGAGGCTGTG TATGGAGGAG ATGTATAGAA TCGGAGACAT AGTGGGGAGG AGGGTGGAAG AGATCTGGTT TACCGGCTTT GACGGGTTGC TGACCGCGAA GGTGGAGGGC GACCCCGTGG AGTTTGTAAA GCTATTGATA GACTTAGTGA GTAGCAACTA CTACATACCG CGCTACGTGC TGAGGGCTAC TCCCATCATG GTGGTGGTTA AGACTGACCT AGACGAGTTG CAGAAGGCCG TCGGAGAGCT TGCGGAGCGC TACATATTGC CGGAGGAGAC GTTTAAGATT GAGCTCAAGA AGAGGGGGGT GAAGTACGAC AGGTCGGCGG TCATCGAGTA CGTGGCTAAG GCTGTGAACA GGAAGGTTAA CCTCACAAAG CCGGACAAGG TGGTGTGGAT TGAGATGTTT CCTTCTCGGT CAGGCGTCTC GGTGATCCGG GAGAGCGAGA ACTTCTCGTT GATGCGGAGC CGTACTGGGG AGCAGACGGC GTAA
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Protein sequence | MSWNLVVATG WRLERLCMEE MYRIGDIVGR RVEEIWFTGF DGLLTAKVEG DPVEFVKLLI DLVSSNYYIP RYVLRATPIM VVVKTDLDEL QKAVGELAER YILPEETFKI ELKKRGVKYD RSAVIEYVAK AVNRKVNLTK PDKVVWIEMF PSRSGVSVIR ESENFSLMRS RTGEQTA
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