Gene Paes_1570 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPaes_1570 
Symbol 
ID6459724 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameProsthecochloris aestuarii DSM 271 
KingdomBacteria 
Replicon accessionNC_011059 
Strand
Start bp1709686 
End bp1710639 
Gene Length954 bp 
Protein Length317 aa 
Translation table11 
GC content52% 
IMG OID642725558 
Productmethionyl-tRNA formyltransferase 
Protein accessionYP_002016235 
Protein GI194334375 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0223] Methionyl-tRNA formyltransferase 
TIGRFAM ID[TIGR00460] methionyl-tRNA formyltransferase 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00793908 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGCGAATTA TTTTTATGGG AACTCCTGAT TTTGCCGTTC CATCGTTGAA GGCTATTGCT 
GCTATGGACG GGGATTTCGA GGTTCAGCTG GTTGTCACAG GGAAAGACAA GCCAAGGCGA
AGCAAGCGAT CTGAACCGGA ACCCACGCCG GTTAAAAAAG CAGCCAGAGA GCTCGGAATA
CCTGTTATGG AGGTCGATGA TGTCAAGGAT GAGCGTTTTG TCGATACAGT AGCCCGTTAC
CGGCCCGATG TTCTTGTCGT TGCCGCTTTC AGGATTCTTC CTCCCGCCGT CTATGAACAG
GCCAGGCTGG GCGCATTCAA TCTTCATGCA TCCATTCTTC CTCGCTACCG GGGCGCAGCT
CCGGTGAACT GGGCGATTAT TAACGGCGAG CGGGAGAGTG GTGTGACAAC GTTTTTTCTT
CGGAAATCGG TCGATACAGG CAACATGATT CTGCAGGAAA AAACCCCTGT CTATCCCGAA
GAAAATGCCG GAGAGCTGGC GGCAAGACTT GCAGAGATCG GGGCAGGCGC TGTTGTTAAG
ACGCTTGAGC TGATCCGCGA TGGTCGCGTG GAGCCGTTAT TGCAGAACGA CACTCTGGCA
ACCAGAGCGC CGAAACTCTC GACGGAAAAT ACCAGGATCG ACTGGGTACA GCCTGTCGAC
GCGCTCTGCG ATTTTATTCG GGGCCTTGCG CCCCGTCCTG CTGCCTGGGC GATATTCAAC
CATAAGAAAG TTAAGATTTT CAAGGCATCT GTCGCTGATT TTCATCAGCC TGAAGCCGAA
GAGCAGAGCG CTATTCCCGG TAGGATCGCC GTTGAGAATA ACAGGCTTTT TGTTATGGGG
CTTGATGGAT GGATCGAAAT TCTCTCCTTG CAGATGGAGG GTAAAAAAGT GATGCAGTCT
CATGAGTTCT GCTGCGGGTT TCGCTGTGAT GAGGAGTGTC CGGTATTTTC ATAG
 
Protein sequence
MRIIFMGTPD FAVPSLKAIA AMDGDFEVQL VVTGKDKPRR SKRSEPEPTP VKKAARELGI 
PVMEVDDVKD ERFVDTVARY RPDVLVVAAF RILPPAVYEQ ARLGAFNLHA SILPRYRGAA
PVNWAIINGE RESGVTTFFL RKSVDTGNMI LQEKTPVYPE ENAGELAARL AEIGAGAVVK
TLELIRDGRV EPLLQNDTLA TRAPKLSTEN TRIDWVQPVD ALCDFIRGLA PRPAAWAIFN
HKKVKIFKAS VADFHQPEAE EQSAIPGRIA VENNRLFVMG LDGWIEILSL QMEGKKVMQS
HEFCCGFRCD EECPVFS