Gene Paes_1048 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPaes_1048 
Symbol 
ID6459901 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameProsthecochloris aestuarii DSM 271 
KingdomBacteria 
Replicon accessionNC_011059 
Strand
Start bp1153328 
End bp1154074 
Gene Length747 bp 
Protein Length248 aa 
Translation table11 
GC content53% 
IMG OID642725048 
Productshort-chain dehydrogenase/reductase SDR 
Protein accessionYP_002015734 
Protein GI194333874 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only 
COG ID[COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.201742 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000163271 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGCAACTTT CAGGAAAAGT GGCCCTGATT ACCGGGGCAT CAGGAGGAAT CGGCAGCGCT 
TCAGCGCGGT GTTTTGCCCG AGAGGGAGCG TCGGTTATTC TTAGTGACAG GACGGTTGAG
AGCTGCTTCG AGTTGGAGAA AAGTATTCGT GAAGAGGGGG GGGAGGTACG TGTCATTTCG
GCTGATGTTA CCCGTGAGGC TGAAATCAAA GAAATGTTTG CAGGGCTTGA TCGTCTTGAT
ATTCTGCTTA CTCTGGCAGG AGGCGATCAC GAGCCTGTCA GCGATATCGA GATGATGGAC
TGTGAGAAAA TGAGTATGAA TCTGGATCTC AATCTGAAAT CATGCATGCT CTGCTGCAGG
GAAGCCGCCA GGCTCATGAA GTCGCAGCGA TACGGTCGCA TCGTTACCAT GAGTTCGCTG
GTGTATCGGG GTAGCCCAGG GCAGTTTTCA TATGCCGCGG CAAAGGGCGG GATTTTTTCA
TTTACCCGTT CTCTGGCCAT GGCTCTTGGT TCATGGGATA TTACGGTCAA TGCGCTTGCA
CCGGCTCTTG TCGATGTACC ACTTTTCGAG CGGGTTCTGG GTCCAGAGCG ATGGAAGGCC
ATGGCGGAAG CTGCTGCAGC TCGATACCCT CTGCGTCGGA TTGCTACGGC CGAAGATGTT
GCCAGAGCTG CGCTGTTTTT TGCTTCTGAC GATGCTGCGT TTATAACGGG ACAGATTCTT
GAGATATCGG GCGGCGCACG ACTCTGA
 
Protein sequence
MQLSGKVALI TGASGGIGSA SARCFAREGA SVILSDRTVE SCFELEKSIR EEGGEVRVIS 
ADVTREAEIK EMFAGLDRLD ILLTLAGGDH EPVSDIEMMD CEKMSMNLDL NLKSCMLCCR
EAARLMKSQR YGRIVTMSSL VYRGSPGQFS YAAAKGGIFS FTRSLAMALG SWDITVNALA
PALVDVPLFE RVLGPERWKA MAEAAAARYP LRRIATAEDV ARAALFFASD DAAFITGQIL
EISGGARL