Gene PXO_05538 details

Gene Information

• Locus tag: PXO_05538
• Symbol: rhs
• ID: 6305064
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Xanthomonas oryzae pv. oryzae PXO99A
• Kingdom: Bacteria
• Replicon accession: NC_010717
• Strand: +
• Start bp: 1552767
• End bp: 1557506
• Gene Length: 4740 bp
• Protein Length: 1579 aa
• Translation table: 11
• GC content: 62%
• IMG OID: 642638837
• Product: RHS Repeat family
• Protein accession: YP_001912713
• Protein GI: 188575784
• COG category: [M] Cell wall/membrane/envelope biogenesis
• COG ID: [COG3209] Rhs family protein
• TIGRFAM ID: [TIGR01643] YD repeat (two copies)

Plasmid Coverage information

• Num covering plasmid clones: 10
• Plasmid unclonability p-value: 0.0425564
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGCACCG CCGCCAAACA TTTCGATCCG CAGTTGGGCA TCGACATCCA CATGTATGCG 
ATGCCGCCAT TTCCGCTGCC GACGCCGCAT ATCGGCCTGG TACTGGATCC GTTCGACTAT 
CTGCCGTTCC TCGGCGCCAC GGTCACCGTC AACGGGGTCA AACGCGCCAC TGCGGGCACC 
GGCGGGCTGG ATATCCATAT TCCGCTGGGC ATGTGGACGC CGCAGCTGAG CATGCCGATG 
GGGCCGCAGT TCGACGGCGA AGAGATCTTC ATGGGCAGCA AGACCGTCAC CGCCGATGGC 
GACCCGTTTT CGCGGCTTGC TGCGCCGGTG CTGGATTGCA ATCTGGCCGG GCTGATTCCG 
CCGTTCCGCA TCAAGAAGCT CAAGAAGCCG TTCCGGTCGC TGTGGCTGCC GACCGGCATC 
AACGTCGCGA TTCCCACCAA CGTCAAGGTG GGTGGCCCGC TGACGATCTC ACTGATGGCG 
ATGCTCTTCC ACGCGGCCTT CGCCGGCCTG GGAGCGCTGC GTCGCTCCAA GCTGGGCGCG 
CGCGCGGCGC AGGCGTTCAA GGGCCTGCGG CAGCGGGTGT TCAAGCACAT GGATTCGGGG 
TTCCTCAAGT GCAAGGTGCT GCGCGCCGAG CCGGTGGATA TCCGCGACGG TAGCGTGTCG 
GTGCTGCACG AAGACTTCGC CATTCCCGGC CGCCTGCCGT TGACCTGGAC GCGCCGTTAC 
AGCTCGGCGC AGACCGAGCA GGCGGGCGTC TGCGGTCACG GTTGGCAGAC GCCCGGCGAC 
ATCCGCCTGG AGATCGAGGC CGACGGCGTG GTGCTGTTCC ATGATGGCCG CGGCGCGGCG 
GTGTTCCCGC AGTTGCCGGA CGCGACGACC AGCGAGGTGC GCGAGTTCGT CGATGGCGCG 
CGGCTGTCGC GGGAAGGAGC GGATTTATTG GTCCGCACCA AGGACGACAC GCGCTACCGC 
TTCGTCGATC TGCCGGCGGC GGGCGTTGCG GTGTTGCCGC GTGCGCGCAG TCTGCCGATC 
GTGCAGGTCG AAGATGCCTG CGGCAATCAC TGGCGCTTCG AGCGCCGCGA TGGCCACCTG 
GTGCGCATAG TGGAGAGCGG CGCGGACGGC GTGCAAGGCC GCTTCATCGA GGTGGAGGCG 
CGGCATGGAC GGATCGATCG ATTGCAGTTG CACGATCCGG CGACCGGCTT GACGCATCCG 
CTGGTGGCCT ATCGCTACAC GGATGGCGAC CTGGTCGCTG CCGAGGACGC GCTCGGCGCA 
CCGCGCAGGT TCGTCTACCG CCAGCACCGC CTGCTGCAGC ACACCGACCG GGTGGGCCTG 
TCGTTCTATT ACGACTACGA CCGGCAGTGG CGCGTGGTGC ATAGCTGGGG CGACGGCGGC 
TTGTACGACT ACCGCTTCGC CTATGACGAC CTGCTGCGCG AGACCGCAGT GACCGATTCG 
CTGGGACATG TCTCGTTGGT GAAGTTCGAC GAGAACCGCC TGCCGTTGTG CGAGATCGAC 
CCGATGGACG GCGTCACCGT GTTCGCGTAT GACGCGGTTG GCCGCACCGT GGCGGTCACC 
GATCCGGAAG GGCTGTGCAC ACGCTTCGAC TATGACGAGC GCGGCAATCT GCGCACGCTC 
ACGCGCCCGG ACGGCAGCAC GCTGCGCCAG ACCTTCGATG ACGACGACCG CCTGATCGCC 
GTCGCCGATC CGGATGGCCA TGCCTGGCAG CAGCGCCACG ACGCGCGTGG CTTGCTGGTG 
GAGCAGACCG ATCCACTGGG AGCAACGGCG CAGTATGTCT ACGACGATCA TGGCCAGCTG 
CGCGCGCACA CCAATGCCCG CGGCGCGACC ACGCGACTGG AGTACGACCG CTACGGCCTG 
CTGGCCGCGT TGATCGATGC GCTGGGGCAG CGCAGCCACT TCGCGCACGA TGCACTGGGC 
CGGCTGCGCA GCCAGTACGA TCCGCTCGGC CATGCCAGCA CGTACGAGTA CGACGCCAAG 
GGAAGGCTGG TGCGGCTGCG CTCGCCCGGC GGCGGCGAGG TGCAGTGCGA GTACGACGCC 
GAAGACCAGC TTGTCCGTTA TGTGGACGAA GCGGGCGCGC AGACCCGGCT GCAGTACGTC 
GGCATCGGCC AGATCGGCAA GCGTCTGCAG GCCGACGGGC ACACGGTGGA GTATCGCTAC 
GACAGCGAGG AACAGCTGGT CGCGGTGATC AACCAGCGTG GCGAACGCTA TGAGCTCAAG 
CGCGATGCGC TGGGCCGCAT CGTCGAGGAA GTGGATTACT GGGGCCAAGC CCGCCGCTAC 
GACTACGACG CCTGCGGCCG TCTGACCGCG ACCCACGATC CGCTCGGTCA GCGCATCGCC 
TATGCCACCG ACAAGCTGGG CCGGATCGTG CGCAAGACGC TGGCCGACGT GCGCCAGCCG 
GGCCAGCAGC TGCAGGAGCA TTTCGTCTAC GACCGGCGCG GGCAACTGGT CGAATTGCGC 
AACCCGCATC GCAGCGCCAC CCGTCGCTTC GATGCCTTGG GCCAGCTGCT GGAAGAAGTG 
CAGGACGGGT TCCGGGTCGG CTACGGCTAC GACGCGGTGG GCAATCGCGT CTTGCGCGAG 
ACCTCGGCCG GCAATCGCGT CGCCTTCGGC TACGACCTGC GCGACCAGGT GGTCTCGGTG 
GCGATCAACG ACGACGCCCC GCTCCTGATC GAGCGCGACG CGCTTGGGCG CGCCACCCGC 
GAACAACTCA GCGCGCAGGT CGAACGCCGT TTCGCCTACG ACGGCCGCAG CCTGCTCACC 
GCCCAGGCGG TGCTCAAGGA CGCGGTGCCG CTGTTCGAAA CCCACTACGA CTACGATCGC 
GCCGGCAACC TGACCCACCG CCGCGACAGC GTGCAAGGCG TGGACGAGTA TCGCTACGAC 
GCCATCGGAC GGCTGCTGCA GCACACTGAC CCGAAGGGCA AGATCGAACG TTTCTTCAAT 
GACCCGGCCG GCGACCGCCT GGCCACACGC GTCCAGCAGG TGCAACTGCG CAAGGTGGTC 
GGCGGCGACG ACGAACAGCA GGTGCAATGG ACCCGCGAGG GCACGTACGA CGGCGTGCAC 
TACGTCTTCG ATCGCGCCGG CGACCTGATT CGCAAGGGCA GCCCCCACGG CCCCGCACCC 
GACGACCTGG AACTGTGCTG GGACGCCAAC CACCGCCTGG CCGAAAGCCG CAAAGCCGGG 
CAAACCACCT ACTACGGCTA CGACCCGCTG GGCAGACGGG TGTTCAAGCG CAACCCGACC 
CACACCACAT GGTTTTACTG GGACGGCGAC GCCTTGCTGG GCGAAGTGAA GCACGCCAAC 
GACGACCCGG ACGCCGCCCC AGTCTGGATC GGCAATGTCG CGAACCTGAT CGAGGTCAAG 
CGCCGCAAGG AGAAACTCGC CAACCTGCAT GAGCGGGTGC GGGAGTATGT GTATTACCCC 
GGGACGTTTG TGCCTTTGGC GTTGGTGGAT AAAAAACTGC TGCGCGTGCA GATGAATGAG 
GCAGGATCCG ATGAAGCTGA GGATTCGCTG AGAGATGCGC CGCTGGGAAA CTTTGGTGCG 
AATGGCCGCT TAAACGAGGC TATATCCGAG AATCACCAAG TTGAGTTTTC CGTTGATTCA 
GCAATCTTGG CGGAGGTCGA AGCTAGTGCA TCGAAACGGA TGCTTGACGA CAGCGCCAGG 
TGTGGCGATC CCGCGTCTGC ACAACGTTTA TCAACTGGTG AAAAATCTTC CGAATCTGGT 
AAGCAGTTTG GTTTTTTAAA TGGCATGGTC CTGGGCGGGA CGCCACCACC CAAGCTAGAA 
GATGCCCGGT CTGATACTTT AGTTGTGGGG AGATTTGTTG AAAGAGTGCA TGAGTCGCAG 
TTCCCGAGTA TGCGTTTGGG TTCCTCCGGG TTAACTTCGA CTTCTGCTGA AAAGGTGTCC 
GCTCCTGCTG TGCTTCCAAT TGACGTGCGT GCAGTAGTAG AGCCGGCCTC TTTCGATGAG 
ATGCATGAGC CGTTTCAAAA TTTTGAGTGG CGTGGGGTTT CTCTCTACTA TCAGGTTGAT 
CCCAATGGCT CGCCGGTCCG AGTGTTTACT AAGGAAAGCG AAGTAGTTTG GTCTGCATCA 
TATGGTGCGC ATGGTGATCG TATTGTTGAT GTCGAGAATA TCTTCAATCC AATCAGTGGG 
CAGGGGCAAT ATCGGGATGA TGAGAGTGGT CTTTTTTACA ATCGCTATAG ATACTATGAG 
TCTTCTGTCG GAGCCTATCT ATCGCAAGAT CCAATGGGTA TGCTCACTGG GTCAAATGTT 
TACTCCTATG GACTCAATGC CATGGGTTGG GTTGATCCAC TCGGGTTAGT AAGTGGCGGA 
GCTTGGGATG CCATTTCTTT CTTCAGAGAT CAAAATTCTC TGCTTTCTGT TGTAGATGAG 
GATTTGCTTG CTGCGTCTGG TGCAAAAAAT GCTCAGAATA CCGTTGCTCT TTTGCGTGTT 
GGTGATCGTG AATTCATTGG GGTCAATAGC CGGATTCAGA ATCCAAAAAA TCCTTTCACT 
GCCGGTCCAA TCAATAACAT CACCAAATTT CACGCTGAGG GTAATGCTGC CCAACAGGCG 
ATTGATGCTG GTATGGTGGG AAAACACCGA ATCGCAGAAA TGTGGGTTGA TAGAGACCTT 
TGCCATGCTT GCGGTCCCTC TAACGGAGTT GGCTCCCTTA CAAGAGCCCT AGGCTTGGAT 
GCCATCATCG TGCATACTCC CGCTGGTACC AGAAAATTTA ATGCTCCATG TGCAGGGTAA 

 

Protein sequence

MSTAAKHFDP QLGIDIHMYA MPPFPLPTPH IGLVLDPFDY LPFLGATVTV NGVKRATAGT 
GGLDIHIPLG MWTPQLSMPM GPQFDGEEIF MGSKTVTADG DPFSRLAAPV LDCNLAGLIP 
PFRIKKLKKP FRSLWLPTGI NVAIPTNVKV GGPLTISLMA MLFHAAFAGL GALRRSKLGA 
RAAQAFKGLR QRVFKHMDSG FLKCKVLRAE PVDIRDGSVS VLHEDFAIPG RLPLTWTRRY 
SSAQTEQAGV CGHGWQTPGD IRLEIEADGV VLFHDGRGAA VFPQLPDATT SEVREFVDGA 
RLSREGADLL VRTKDDTRYR FVDLPAAGVA VLPRARSLPI VQVEDACGNH WRFERRDGHL 
VRIVESGADG VQGRFIEVEA RHGRIDRLQL HDPATGLTHP LVAYRYTDGD LVAAEDALGA 
PRRFVYRQHR LLQHTDRVGL SFYYDYDRQW RVVHSWGDGG LYDYRFAYDD LLRETAVTDS 
LGHVSLVKFD ENRLPLCEID PMDGVTVFAY DAVGRTVAVT DPEGLCTRFD YDERGNLRTL 
TRPDGSTLRQ TFDDDDRLIA VADPDGHAWQ QRHDARGLLV EQTDPLGATA QYVYDDHGQL 
RAHTNARGAT TRLEYDRYGL LAALIDALGQ RSHFAHDALG RLRSQYDPLG HASTYEYDAK 
GRLVRLRSPG GGEVQCEYDA EDQLVRYVDE AGAQTRLQYV GIGQIGKRLQ ADGHTVEYRY 
DSEEQLVAVI NQRGERYELK RDALGRIVEE VDYWGQARRY DYDACGRLTA THDPLGQRIA 
YATDKLGRIV RKTLADVRQP GQQLQEHFVY DRRGQLVELR NPHRSATRRF DALGQLLEEV 
QDGFRVGYGY DAVGNRVLRE TSAGNRVAFG YDLRDQVVSV AINDDAPLLI ERDALGRATR 
EQLSAQVERR FAYDGRSLLT AQAVLKDAVP LFETHYDYDR AGNLTHRRDS VQGVDEYRYD 
AIGRLLQHTD PKGKIERFFN DPAGDRLATR VQQVQLRKVV GGDDEQQVQW TREGTYDGVH 
YVFDRAGDLI RKGSPHGPAP DDLELCWDAN HRLAESRKAG QTTYYGYDPL GRRVFKRNPT 
HTTWFYWDGD ALLGEVKHAN DDPDAAPVWI GNVANLIEVK RRKEKLANLH ERVREYVYYP 
GTFVPLALVD KKLLRVQMNE AGSDEAEDSL RDAPLGNFGA NGRLNEAISE NHQVEFSVDS 
AILAEVEASA SKRMLDDSAR CGDPASAQRL STGEKSSESG KQFGFLNGMV LGGTPPPKLE 
DARSDTLVVG RFVERVHESQ FPSMRLGSSG LTSTSAEKVS APAVLPIDVR AVVEPASFDE 
MHEPFQNFEW RGVSLYYQVD PNGSPVRVFT KESEVVWSAS YGAHGDRIVD VENIFNPISG 
QGQYRDDESG LFYNRYRYYE SSVGAYLSQD PMGMLTGSNV YSYGLNAMGW VDPLGLVSGG 
AWDAISFFRD QNSLLSVVDE DLLAASGAKN AQNTVALLRV GDREFIGVNS RIQNPKNPFT 
AGPINNITKF HAEGNAAQQA IDAGMVGKHR IAEMWVDRDL CHACGPSNGV GSLTRALGLD 
AIIVHTPAGT RKFNAPCAG