| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PXO_04379 |
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| Symbol | lppC |
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| ID | 6304558 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Xanthomonas oryzae pv. oryzae PXO99A |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010717 |
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| Strand | - |
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| Start bp | 1046723 |
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| End bp | 1048453 |
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| Gene Length | 1731 bp |
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| Protein Length | 576 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 642638333 |
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| Product | LppC superfamily |
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| Protein accession | YP_001912215 |
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| Protein GI | 188575286 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG3107] Putative lipoprotein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 0.418769 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACAAGC GTGTTGCAAG GATCTCCGCC CTCTCGCTGA TGGTGATGCT GGCCGCCGGT
TGCGCCACCA GCAGCGTCAC GCCGACCGCT TCGCCGACGC CGAGCGCGGC ATTGGCGCTG
CTGGACCAGA GCGAGCCGCG CGAAGCCGCG CAGCAGCTGG AAGCCGAAGC CGCCAGTGCC
AGCGGAGTGC AGCGCAGCCG ATTGCTGGCT GCGGCCGCGT TCGGTTGGCA CGACGCTGGC
GACGATGCGC GTGCCCGTAC GTTGCTGGCG CAGGTCAACG CGCGCCAGCT GAGCGGCGAG
GAACGCGCCC GCTTCGGGCT GCTCACCGGC GAGTTGGCGG TGATCGACAA GCAGAGTGTG
CAGGCGTTAC AGGCGCTGGG CGACAGCCCG CAGGGACTGA CCCAGCCGCT GCAGACGCGT
TGGTTTATGG CACGCACCGC CGCACTGGAA GCGACCGGCG ACCTGTTCGG CGCGGCCGCC
AACCGCGCGC GCGCCGATGC CAGCCTGACC GGCACCGCGC GCAGCGAGAA CCAGCGCGCG
ATCGTGCGCC TGCTCGCCGC CCTCGACGAC GCCACCCTCA AGGGCCGCAC CGCCGCACTG
CCGGCCGGCG ACCCGCTGTA CAACTTCGCT GGGCGCGCGT TGATCAGCCG CGGTCTGGGA
CTGCCGCGCG CGTTCGAGCG CGATGCGCAG TGGGGCTTCG ACACCAGCAA GCGCCCGCCG
GCCGAACGCG ATGGCTACCG CCCACCGGTC AAGCTGGGTG TGCTGTTGCC GATCACCGGC
AACCTGGCCA CCGTCGCCGC GCCGGTGCGC GATGGCCTGC TGGCCGGCTA CTACGCGGAA
ACCCGCCGTC GCCCGGAAGT GCAATTCTTC GACACCGCCG GCACGCCAGC CGGTGCCAAT
GCCGCCTATG ACAAGGCCGT GAGTGCCGGG GTGGATTACG TGGTTGGCCC GTTGGGGCGC
GACGAAGTCA GCGCGCTGTT CGCGCGCGGC CAGCTGGCGG TGCCGGTGCT GGCGCTCAAC
CGCCCCACCG ACAACAAGGC CCCACCCAGC GGCAGCGCCG GGTTCTCGCT GGCGCCGGAA
GACGACGGCA TCATGGCCGC CGAATATCTG CTCTCGCGCG AACGCCGCAA CGTGCTGATC
GTCGGCACCA GCGACGACAA CGGCAAGCGC ACCATCAAGG CCTTCCGCGA CCGCTTCACC
GAACGCGGCG GCACCGTCGC CGGCAGCATC AGCGTGGCCG ATGCGCCGGG CGATATCGGT
GCGCAGTTGC GCAATTACGG CACGGCCGAT GCGGTGTTCC TGGCAGTGCG CGGCAACACT
GCACGTGCGC TGGCGCCGCA GCTGGCACTG GCCGGGTTCG CCGGCAAGTC GCGCGTGGGC
ACATCGCAGT TGGTGGCCGG CACCGGCAAG GTCGAAGACG ATCTGGTGCT GGATGGCATC
GTCTACCCGA GCGAAACGTG GACCGTCCTG GGCGTGTCCG GCCTGCCGGC AGTGAGCGAG
GTGGCCAGCA CCCTGCCCAG CGCACGCGGC CCGGCCGCCC GCCTGTTCGC ATTCGGCTAC
GACGCCTGGA AGATCACTGC GTACCTGGAA AAACTCGCCA CCGGCAGCGA TGGCGGCCTG
CACGGCGCCA CCGGCACCTT GCACCTGGAT GGCTTCGGCA ATGTGCTGCG CACGCCGGCC
TGGTCCACCT TCAGCGGTGG CCGTCCGACC CCGATCGCCG ACGGCCGCTG A
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| Protein sequence | MNKRVARISA LSLMVMLAAG CATSSVTPTA SPTPSAALAL LDQSEPREAA QQLEAEAASA
SGVQRSRLLA AAAFGWHDAG DDARARTLLA QVNARQLSGE ERARFGLLTG ELAVIDKQSV
QALQALGDSP QGLTQPLQTR WFMARTAALE ATGDLFGAAA NRARADASLT GTARSENQRA
IVRLLAALDD ATLKGRTAAL PAGDPLYNFA GRALISRGLG LPRAFERDAQ WGFDTSKRPP
AERDGYRPPV KLGVLLPITG NLATVAAPVR DGLLAGYYAE TRRRPEVQFF DTAGTPAGAN
AAYDKAVSAG VDYVVGPLGR DEVSALFARG QLAVPVLALN RPTDNKAPPS GSAGFSLAPE
DDGIMAAEYL LSRERRNVLI VGTSDDNGKR TIKAFRDRFT ERGGTVAGSI SVADAPGDIG
AQLRNYGTAD AVFLAVRGNT ARALAPQLAL AGFAGKSRVG TSQLVAGTGK VEDDLVLDGI
VYPSETWTVL GVSGLPAVSE VASTLPSARG PAARLFAFGY DAWKITAYLE KLATGSDGGL
HGATGTLHLD GFGNVLRTPA WSTFSGGRPT PIADGR
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