| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PXO_02047 |
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| Symbol | |
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| ID | 6307270 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Xanthomonas oryzae pv. oryzae PXO99A |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010717 |
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| Strand | - |
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| Start bp | 3864630 |
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| End bp | 3865127 |
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| Gene Length | 498 bp |
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| Protein Length | 165 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 642641014 |
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| Product | Hcp family protein |
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| Protein accession | YP_001914862 |
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| Protein GI | 188577933 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3157] Hemolysin-coregulated protein (uncharacterized) |
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| TIGRFAM ID | [TIGR03344] type VI secretion system effector, Hcp1 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 0.106829 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAGCACG CGTTTCTTTC TATCGATACC ATCAAGGGTG AATCGCACGA CGACAAGCAC
ACGGACTGGG TGGAGATCAA GTCGTTCTCC CAGGACTTGT TGCAGCCGCG CTCGGCCACC
GCATCCACCG CTGGCGGTCA GTCGGCCGCT CGTGTAAACC TGTCGCCGAT CGAGATCGTC
AAGTCGATCG ATCTGTCCAC CACCGCGCTG AATCAGGCGT GCGCCAACGG CACCACCTTC
CCCAAAGCCC GCATCGAGTT CATGCGCGCC GACAAGGACG GTAATGCCAT CAACTACTAC
CTGGTTGAGT TGATGAACGT GCTGGTACAC CGCGTCACCA CGACGGTGGA CGAGGACGGC
ATGCCGCAAG AAGTCGTCCA GCTGAGCTTC GGCGCGATCA AGTGGACCTA CAACCAGCAG
AAGCCGGAAG GCGGAGTCGG CGGCAAGGCG GTTGCGCAGT GGAGTGCTAC CAAGAACATT
CCCAACTACA CCGTTTGA
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| Protein sequence | MQHAFLSIDT IKGESHDDKH TDWVEIKSFS QDLLQPRSAT ASTAGGQSAA RVNLSPIEIV
KSIDLSTTAL NQACANGTTF PKARIEFMRA DKDGNAINYY LVELMNVLVH RVTTTVDEDG
MPQEVVQLSF GAIKWTYNQQ KPEGGVGGKA VAQWSATKNI PNYTV
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