Gene PXO_01562 details

Gene Information

• Locus tag: PXO_01562
• Symbol: tolR
• ID: 6306751
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Xanthomonas oryzae pv. oryzae PXO99A
• Kingdom: Bacteria
• Replicon accession: NC_010717
• Strand: -
• Start bp: 3351736
• End bp: 3352185
• Gene Length: 450 bp
• Protein Length: 149 aa
• Translation table: 11
• GC content: 63%
• IMG OID: 642640503
• Product: protein TolR
• Protein accession: YP_001914359
• Protein GI: 188577430
• COG category: [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG0848] Biopolymer transport protein
• TIGRFAM ID: [TIGR02801] TolR protein

Plasmid Coverage information

• Num covering plasmid clones: 23
• Plasmid unclonability p-value: 0.214116
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGATCTCCG GTATTTCCCG CCGTAAGAAG CGCAAGCTCA AATCCGACAT CAACGTCGTG 
CCGTATATCG ACGTGATGCT GGTGCTGCTG ATCATCTTCA TGGTGACCGC ACCGTTGCTG 
ACCCTGAGCA CCGACGTCAG CCTGCCCAGC TCGCGCGCCA AGTCGCTGGA GAGCAAGCAG 
GACCCGGTCG TGGTGGTGGT CGCCGCCGAT GGCAAATTGG CTCTGCAACT GCCCAAGGGC 
AAGCCGCAGC CGATGGACGT GGCTGCGCTG CAGGCGCAGC TGGCTGCGAT CGTGGCGCAA 
GACAAGGATG CGCGCGTGGT GGTGGCGGGC GATCGCGCCG CGCCGTATCA AAAGATCATG 
GACGCCATCG GTGTGCTCAA GCAGGCCAAG GTCGAGAAGG TGGGCCTGAT TTCCGACTCC 
GGCGGCACTG CAGGCAGCGA TGCACGCTGA 

 

Protein sequence

MISGISRRKK RKLKSDINVV PYIDVMLVLL IIFMVTAPLL TLSTDVSLPS SRAKSLESKQ 
DPVVVVVAAD GKLALQLPKG KPQPMDVAAL QAQLAAIVAQ DKDARVVVAG DRAAPYQKIM 
DAIGVLKQAK VEKVGLISDS GGTAGSDAR