| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PXO_00403 |
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| Symbol | |
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| ID | 6305456 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Xanthomonas oryzae pv. oryzae PXO99A |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010717 |
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| Strand | - |
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| Start bp | 1997860 |
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| End bp | 1999929 |
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| Gene Length | 2070 bp |
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| Protein Length | 689 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 642639225 |
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| Product | Putative signal protein with PAS, GGDEF and EAL domains |
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| Protein accession | YP_001913097 |
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| Protein GI | 188576168 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain
[COG2200] FOG: EAL domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAAAAAG GCAAAGATCT CACCCTCCGC CTGATGATCG TCGACGACAG CGTGGAGAGT
GCCGAGACCA TCGTCACCGC GCTGCGTAAC GGCGGCATTG CGGTGCGCCC TTCGCGGCCG
CAAAACCAGG AGGAACTGGC CAACATGCTG TCGGGCCAGA TCGATCTGGC CATCCTGGGT
CAGGCGCAGC AAATCCCCAT GAGCGCCCTG CAGACGCAGA TCGCCGGCAG CGGCAAGGAC
ATACCGGTCA TCTTGCTGGC CGAGCGAATC GAAGAGAACG CCCTGGTCGA GGCCGCTTCG
CATGGCGTGC GTGCCATTGC CTTGCGTAAC CGCCCCGCAC ACTTGCTCGC GCTGGTGCGC
TCGGAATGGA ACGACCTGCA GGCCCGTCGC GGGCTGCGCC GCATCGAAGC GCAGATGCGC
GAAACCGAGC GCCGCTGCGA CGCCCTCATC GCGTCCTCGC GCGACCCGAT CGCCTACGTG
CATGAAGGCA TGCACATCCG CGCCAATGAC GCCTATCTGG AAATGTTCGG CTTCGAGTCG
TTCGACGATG TCGAAGGCAT CTCGTTGCTG GACATGATCG CCGCGCAGTA CGTCGACGAT
TTCAAACAGC TGCTCAAGGC GATGTCCAAG GGTGAGCCGC CGCCGGCGCA GTACAAACTC
GACGCGCGCC GCGTGGAAGG CGACACCTTC CCGGCCACGA TGGAATTTGC CACCGCCACC
TACGAAGGCG AGCCGTGCAT CCAGGTGGTG TTCCGCCGCC GGGAGGAGTT CGACCCGGAA
TTGGCACGCG AAGTCGAAGA CCTGCGTCAA CGCGACCAGG TCACCGGTCT ACTCAATCGT
CCTACCTTCA TGGTGGCGCT GGAACAGGCC GTGGCGCAGG CCGGTCGTAG CGAAGGCCAG
TCGGGCTTCC TGTTGATCGA GCCGGATCAT TACGCCCGCA TCCTCCCGGA ATTTGGCCTG
GATTCGGCCG ATGCACTGAT CGCCGCGCTC GCCGCGCATG TCGCCAGCGT GCTGGACGAC
AGCGTGGTTG CCGCACGCTT CGGCGAACAC AGTTTCGCCC TACTGATGAA CGGCAATTAC
GCGCGCACGC ACGCACTGGC GGAAATCGTG CGAGATGCGT TCGCTCAGCA CGTCTTCAGC
GTGGGCGTGC GTTCGGCCAC GGTGACGGTC AGCATCGGCG GCGTACAGAT TGGCGAAAAG
ATCGCCAGTA TTGGTCAGGT ACTCAATCGC GGCACCGAAG CGGTGCGCAC CACCGCCGAG
CTCGGTGGCA ATGCGATCAG CATCTACGAC CCGGCCGCGG CCGATCGGGC GGAAGAAGAA
CGGATAGAGC GCTGGGTCAA GCAGTTGCGC GAGGCCCTGG TTGGCGACGG CTTCGTGCTG
TATTACCAGC CGGTGCTCAA TCTACAAGGC GAGCCGCTGG AGCTGTATCA GGCCTTCCTG
CGCCTGGAAC GCAATGGCGA AATGATGTCG CCGAATGCGT TCATGGCGAT TGCCGAAGAG
CACGATCTGG TCACCGAGAT CGACCGCTGG GTGGTGGCGC GCGCGATCCG GCAACTGGGC
GAGCGGCAAC GTGCCGGGCA CAAGACGCAC CTGCTGGTAC GCATCGGGCC CAATTCGTTC
TCCGACCCGC AGATGATCGA CACCATCCGT GAGCAGTTGG CCGTGTACGG CGTGCCCGGT
GAACGGCTGT GGCTGCAGAC GCCAGAGTCG AAGGTGTTTA CCCATTTGCG CAACGCGCAG
CAGTTCCTGA GCGCGGTGTC GGCGATGGGC TGCAAGGTCG GGCTGGAACA GTTCGGGTCG
GGCCTGGATT CGTTTCAGTT GCTGGCGCAT TTCCAGCCCG CCTTCCTCAA ACTGGATCGC
GGCATCACCG GCGACATCGC CTCGGCCCGG GAAAGCCAGG AGAAGATCCG CGAGATCACC
TCGCGCGCGC AGCCGGCCGG CATTTTGACA ATGGCCGAAT TCGTCGCCGA TGCGCAGTCG
ATGAGCAGCT TCTTCACTGC AGGCGTGGAT TACGTACAGG GCGATTTCGT GGCACCGACC
GGGCCGTTGA TGAACTACGA GTTCGGCTGA
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| Protein sequence | MQKGKDLTLR LMIVDDSVES AETIVTALRN GGIAVRPSRP QNQEELANML SGQIDLAILG
QAQQIPMSAL QTQIAGSGKD IPVILLAERI EENALVEAAS HGVRAIALRN RPAHLLALVR
SEWNDLQARR GLRRIEAQMR ETERRCDALI ASSRDPIAYV HEGMHIRAND AYLEMFGFES
FDDVEGISLL DMIAAQYVDD FKQLLKAMSK GEPPPAQYKL DARRVEGDTF PATMEFATAT
YEGEPCIQVV FRRREEFDPE LAREVEDLRQ RDQVTGLLNR PTFMVALEQA VAQAGRSEGQ
SGFLLIEPDH YARILPEFGL DSADALIAAL AAHVASVLDD SVVAARFGEH SFALLMNGNY
ARTHALAEIV RDAFAQHVFS VGVRSATVTV SIGGVQIGEK IASIGQVLNR GTEAVRTTAE
LGGNAISIYD PAAADRAEEE RIERWVKQLR EALVGDGFVL YYQPVLNLQG EPLELYQAFL
RLERNGEMMS PNAFMAIAEE HDLVTEIDRW VVARAIRQLG ERQRAGHKTH LLVRIGPNSF
SDPQMIDTIR EQLAVYGVPG ERLWLQTPES KVFTHLRNAQ QFLSAVSAMG CKVGLEQFGS
GLDSFQLLAH FQPAFLKLDR GITGDIASAR ESQEKIREIT SRAQPAGILT MAEFVADAQS
MSSFFTAGVD YVQGDFVAPT GPLMNYEFG
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