| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PXO_00167 |
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| Symbol | truD |
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| ID | 6305185 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Xanthomonas oryzae pv. oryzae PXO99A |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010717 |
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| Strand | + |
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| Start bp | 1705861 |
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| End bp | 1707072 |
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| Gene Length | 1212 bp |
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| Protein Length | 403 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 642638956 |
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| Product | tRNA pseudouridine synthase D |
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| Protein accession | YP_001912832 |
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| Protein GI | 188575903 |
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| COG category | [S] Function unknown |
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| COG ID | [COG0585] Uncharacterized conserved protein |
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| TIGRFAM ID | [TIGR00094] tRNA pseudouridine synthase, TruD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 0.37551 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGCTACGCG CCGGGACCGG CGCCGATGCA GCGGGATGTA ATCACCACGC CGAACGATTC
GGCGCATTGC GCGCCACCTC CGGCGCGAAG GCGAATCACA CCATGAGCGA GACCTCTCTG
CTGCCACGTG CACATGGCGC TGCCGTGCTC AGCGCGGCGA TGCGCAGCAC GCCGGACGAC
TTTCAGGTCG ACGAACTGCC GGCGTTCGAG CCTTCTGGCG AAGGTGAGCA TTTGCTGCTC
ACCGTGTGCA AGCGTGGCCA GAACACCGCC TACATCGCCA AGAAGCTCGC GCACTGGGCG
GGCATCGCCG AGATGGGCGT CGGCTATGCT GGCCTGAAAG ATCGCCACGC CGTGACCACC
CAGCGCTTCA GCGTGCATCT GCCCAAGCGC ATCGCGCCGG ATATCGCAGC GCTGGATGAT
GCGCAGATGC AGGTGATCGA TAGCACCTGG CACAACCGCA AGCTGCAACG CGGTGCGCTG
CACGGGAACG GTTTTGTGTT GACGCTGCGC CAGGTACACG GCGAGCGCGA TGCAGTCGAG
GAACGGTTGC AGGCGATTGC TGCGCGCGGC ATCCCCAACT GGTTCGGCGA ACAACGCTTC
GGTCGCGATG GCGGCAACGT GGCGGCTGCG TTGGTGATGT TCGGCTATGT GCAGGCTGCC
GATGGAACAC TGGCGCCGGC ACCAACCTCC AGGCGGCGGC TGCGCAACGA TCAGCGCTCG
ATGCTGCTGT CGGCGGCGCG CTCGGCCTTG TTCAATCGCG TCCTCACCGC ACGTGTGGAG
CAGGACAGTT GGGACAGTGC GCTGGAAGGC GAGGCGTGGA TGCTGGATGG CTCGCGCAGC
GTCTTCGGCC CGGAGCCGTG GAGCGATGCG CTGGCAGAGC GGCTGGCGTG TTTCGATATC
CACCCCAGCG GCCCGTTGTG GGGCGCGGGC GCGTTGCGCT CGACCGATCA GGCGGCAGCA
GTGGAGCAGG GCGCCTTGTC CGATCCGCAA TCCGAAGCGC TGCGCCAGGG TCTGGAAGCA
GCGGGATTGA AGCAGGAGCG CCGCGCGCTG CGCTTGCGTC CGCAAGGTCT GGACTATCGA
TGGCTGGAGG CGCAGACCCT GCAACTGGAG TTCGCGCTGC CGCCTGGCTG TTATGCCACT
GCGGTGCTGT GGGAATTGGG TGAGGTCACC GACGCAGGCC GTTTCGACGC CGGTGTGCGC
TCTGACGAGT GA
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| Protein sequence | MLRAGTGADA AGCNHHAERF GALRATSGAK ANHTMSETSL LPRAHGAAVL SAAMRSTPDD
FQVDELPAFE PSGEGEHLLL TVCKRGQNTA YIAKKLAHWA GIAEMGVGYA GLKDRHAVTT
QRFSVHLPKR IAPDIAALDD AQMQVIDSTW HNRKLQRGAL HGNGFVLTLR QVHGERDAVE
ERLQAIAARG IPNWFGEQRF GRDGGNVAAA LVMFGYVQAA DGTLAPAPTS RRRLRNDQRS
MLLSAARSAL FNRVLTARVE QDSWDSALEG EAWMLDGSRS VFGPEPWSDA LAERLACFDI
HPSGPLWGAG ALRSTDQAAA VEQGALSDPQ SEALRQGLEA AGLKQERRAL RLRPQGLDYR
WLEAQTLQLE FALPPGCYAT AVLWELGEVT DAGRFDAGVR SDE
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