| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_5534 |
|---|
| Symbol | |
|---|
| ID | 1187226 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | - |
|---|
| Start bp | 6301280 |
|---|
| End bp | 6302317 |
|---|
| Gene Length | 1038 bp |
|---|
| Protein Length | 345 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637396853 |
|---|
| Product | SPFH domain / Band 7 family protein |
|---|
| Protein accession | NP_795258 |
|---|
| Protein GI | 28872639 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0330] Membrane protease subunits, stomatin/prohibitin homologs |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGAGTCTGT TCCATCATCA TCACGATCAC AGCGACCACG ATAGCCACGC CAGTCATGGG
CATGGCGGTC ATGGTCATCA TCACCACCAT CACGCAGCGA CCGGGCCGTC GGTGTTCCCC
TGGCGGCGAG CGAGCCTGGC TGCGCTGCTG ATTGCCTTTG CCATCGCCGC GGCCAGCCTG
GTGCAGGTGC GTTCTGGCGA GGCAACGGTG GTCACCCGTT TTGGCAATCC GTCGCGTGTG
CTGCTCGACC CCGGCTTGAA CTGGCGCTGG CCTGCGCCGT TCGAGGCGAC CATTCCGGTG
GACCTGCGCC TGCGTACCAC CTCCAGTGGC TTGCAGGATG TCGGCACCCG CGACGGCCTG
CGCATCATCG TTCAAGCCTA CGTGGCGTGG CAGGTGCAGG GCGACGCTGA CAACGTGCAG
CGTTTCATGC GTGCGGTACA AAACCAGCCT GACGAAGCGG CGCGGCAGAT CCGTACCTTT
GTCGGTTCTG CGCTGGAGAC CACGGCGAGC AGCTTTGACC TGTCCAGTCT GGTGAACACC
GACGCCAGCA AAGTGAACAT CACTGCGTTC GAAAACCAGC TGCGTCAGCA GATTGATCAG
CAACTGCTGG CGACGTATGG CGTTCGTGTT CTGCAAGTGG GCGTCGAGCG ACTGACCCTG
CCGTCGGTGA CGCTCAACGC GACCGTGGAC CGCATGCGTG CCGAGCGCGA AACCATCGCC
ACCGAGCGCA CCGCCGTGGG CAAGCGTGAA GCGGCGCAGA TACGTTCGGC CGCCGAGCGT
GATGCGCGTA TCGTCGAAGC CGATGCCACG GTCAAAGCCG CTGATATCGA GGCGCAGTCG
CGTGTCGAAG CCGCGCAGAT CTACGGCCGC GCTTACGCCG GTTCGCCACA GCTGTACAAC
CTGCTGCGCT CGCTGGACAC ATTGGGCACC ATCGTGACGC CGGGCACCCG ACTGATTTTG
CGCACCGATG CTGCGCCATT CCGTGTGCTG GTGGACGGCC CGCCGACGCT GGACGGCAAG
GGTGGAACAC AACCATGA
|
|---|
| Protein sequence | MSLFHHHHDH SDHDSHASHG HGGHGHHHHH HAATGPSVFP WRRASLAALL IAFAIAAASL
VQVRSGEATV VTRFGNPSRV LLDPGLNWRW PAPFEATIPV DLRLRTTSSG LQDVGTRDGL
RIIVQAYVAW QVQGDADNVQ RFMRAVQNQP DEAARQIRTF VGSALETTAS SFDLSSLVNT
DASKVNITAF ENQLRQQIDQ QLLATYGVRV LQVGVERLTL PSVTLNATVD RMRAERETIA
TERTAVGKRE AAQIRSAAER DARIVEADAT VKAADIEAQS RVEAAQIYGR AYAGSPQLYN
LLRSLDTLGT IVTPGTRLIL RTDAAPFRVL VDGPPTLDGK GGTQP
|
|---|
| |