Gene PSPTO_5435 details

Gene Information

• Locus tag: PSPTO_5435
• Symbol: hcp-2
• ID: 1187122
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudomonas syringae pv. tomato str. DC3000
• Kingdom: Bacteria
• Replicon accession: NC_004578
• Strand: +
• Start bp: 6181106
• End bp: 6181624
• Gene Length: 519 bp
• Protein Length: 172 aa
• Translation table: 11
• GC content: 57%
• IMG OID: 637396752
• Product: secreted protein Hcp
• Protein accession: NP_795162
• Protein GI: 28872543
• COG category: [S] Function unknown
• COG ID: [COG3157] Hemolysin-coregulated protein (uncharacterized)
• TIGRFAM ID: [TIGR03344] type VI secretion system effector, Hcp1 family

Plasmid Coverage information

• Num covering plasmid clones: 21
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCTACGC CAGCGTACAT GTCCATCACC GGCACCAAAC AAGGCCTGAT CACCGCCGGT 
GCCTTCACTG CTGACTCGGT CGGCAACACC TACCAGGAAG GTCACGAAGA CCAAGTGATG 
GTTCAGGGCT TCAGCCACGA ACTCATCATC CCGCGTGACC CGCAGTCGGG CCAACCTACC 
GGTCAGCGCG TCCACAAGCC GGTCAAGATC ACCAAAGTGT TCGACAAGTC CTCGCCTCTG 
CTGCTGGCAG CACTGACCTC TGGCGAGCGT CTGACCGAAA TCACCATCCA GTGGTACCGC 
ACCTCGGCTG CCGGCACTCA AGAGCACTAC TACACCACCA AGCTTGAAGA CGCGATCATC 
GTTGACATCA AGGACTACAT GCACAATTGC CAAGACCCGG CGAACGCGCA TTTCACCCAT 
TTGGAAGACG TAGAATTCAC CTACCGCAAA ATCACTTGGA CCCACGAAGT ATCCGGTACT 
TCGGGTTCCG ATGACTGGCG TTCCCCGGTC GCTGGCTAA 

 

Protein sequence

MATPAYMSIT GTKQGLITAG AFTADSVGNT YQEGHEDQVM VQGFSHELII PRDPQSGQPT 
GQRVHKPVKI TKVFDKSSPL LLAALTSGER LTEITIQWYR TSAAGTQEHY YTTKLEDAII 
VDIKDYMHNC QDPANAHFTH LEDVEFTYRK ITWTHEVSGT SGSDDWRSPV AG