| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_5425 |
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| Symbol | |
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| ID | 1187112 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 6166575 |
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| End bp | 6169223 |
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| Gene Length | 2649 bp |
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| Protein Length | 882 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 637396742 |
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| Product | clpB protein, putative |
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| Protein accession | NP_795152 |
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| Protein GI | 28872533 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0542] ATPases with chaperone activity, ATP-binding subunit |
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| TIGRFAM ID | [TIGR03345] type VI secretion ATPase, ClpV1 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCAATG TAGACCTGCA ACAACTTATT CAAGCGCTGG ACGCCGAAAC CCGTCGTGAT
CTGGAAAGCT CCGCGGAGCG CTGCGTAGCC CGGGGCGGTA GCAAGATTCT GGTTGAAGAT
CTGTTGCTGG AGCTGCTGGA GCGTCCGCAA GGTCTGCTCG CGCGTGCCCT GCAGGATGCT
GAAGTGGACG CTGGTGAATT GAGTGCCTCT CTGCAATCGC GGGTCGAGCA CAGCGCTTCA
CGCAACCCGG TGTTTGCTCC GGAACTGGTG CAATGGCTGC AGGATGCCTT GCTGGTGGCC
AACCTTGAAC TGGGTCAGAC CCAGGTCGAA CAGGCCGCGC TGATCCTCGC ACTACTGCGC
AACCCGATGC GCTACGCCGG TAGCCGCTAT CAGCCTTTGC TGGCCAAACT GAATATTGAT
CGGCTGAAAG AGTTTGCTCT GTCCAAGCAA GAGCAGCCTG CCAACGGCAA ATCGGCTGCT
CAGGGCGAAT CGCTGTTGGA GCGTTTCACT CACAACCTGA CCCAGCAGGC CCGCGACGGC
AAGCTTGATC CGGTACTGTG CCGCGATGGC GCGATTCGGC AAATGGTCGA CATCCTGGCT
CGGCGCCGCA AGAACAATCC GATTGTGGTC GGCGAAGCCG GTGTCGGTAA AACCGCCATC
GTTGAAGGTC TCGCATCCCG AATTGCTGCG GGTGAAGTGC CGCAGGCGCT CAAGGGCGTC
GAGCTGCTGT CGCTGGACAT GGGGCTGCTG CAGGCTGGCG CCAGCGTAAA GGGTGAGTTC
GAGCGTCGCC TCAAAGGTGT GATCGACGAA GTCAAAGCGT CGCCTAAGCC GATCATTCTG
TTCATCGATG AAGCCCACAC GCTTATCGGT GCTGGCGGCA ACGCTGGTGG TTCCGATGCC
GCCAACCTGC TCAAGCCGGC TCTGGCGCGT GGCGAGTTGC GCACCATCGC TGCCACGACG
TGGGCTGAGT ACAAGAAGTA CTTTGAAAAA GACCCGGCTC TGGCGCGTCG CTTCCAGCCT
GTTCAACTGC ATGAACCGAC CGTAAGCGAA GCCGTGACCA TCCTGCGTGG TCTGGCACAA
GTCTATGAGA AGAGCCATGG CATTTACTTG CGCGACGACG CTGTGGTTGC TGCCGCCGAG
CTGTCTGCCC GCTATCTGGC TGGCCGCCAG CTTCCTGACA AAGCAGTCGA TGTTCTCGAT
ACGGCGTGCG CGCGCGTGCG TATCAGCCTG GCTGCCGCGC CGGAGAGTCT GGAGCGCCTG
CGTGGCGAGC TGGCTGAAGG TGGTCGCCAG CGTCAGGCAT TGCGTCGCGA CGCTGAAGCC
GGTCTGCTGA TTGACCACGA GTCGCTGGAA GCTCTGGAAA CGCGTCTGCA CGCAGCTGAA
GAGGAAAGGG TTGCACTGGA AGCAATGTGG CTCGAACAGA AAACATTGGC CGAACGCTTG
CTGGAACTGC GTCAGCAACT GGCCAAGGCG CGTGAAGCGG TAGCTGCCGT GCCAGTCGTT
GAAATCGGAG AGGACGACGA GGGCACGGTC ATCGAAGCCG TTGCGCTGGA TGAAACGCAG
AGCGTAGAGG CGCTGACAGC AGCCCTGAAC GATACCCATG TCGCCCTGGC CGCACTGCAG
GTCAAGGAGC GACTGGTGAG CTTCGAGGTC TGTCCGCGTC TTGTGGCTGA GGTGATCAGC
GCCTGGACCG GTGTCCCGCT GGCGCAACTG GCTCGTGAGC ACAACGCCAA GGTTGCCAGT
TTCGCCAAGG ACCTTCGTAT TCGCATCCGT GGTCAAGAGC AGGCCGTTCA TGCCCTTGAT
CGCTCCATGC GCGCTACTGC CGCTGGCTTG AACAAACCCG ATGCGCCGGT AGGCGTGTTT
CTGCTTGTGG GGCCGAGCGG CGTTGGCAAG ACTGAAACGG CGCTGGCGCT CGCTGATCTG
TTGTACGGAG GTGATCGTTT TATCACCACC ATCAACATGT CCGAGTTTCA GGAGAAGCAT
ACGGTTTCGC GCCTGATCGG TGCGCCGCCA GGTTACGTCG GTTATGGCGA AGGCGGCATG
CTCACCGAAG CTGTACGTCA GAAGCCGTAT TCGGTCGTGC TGCTTGATGA AGTCGAGAAA
GCCGACCCTG ATGTGCTCAA CCTGTTCTAT CAGATCTTCG ACAAAGGTGT GGCCAACGAC
GGCGAGGGAC GCGAGATCGA CTTCCGCAAT ACGCTGATTC TGATGACATC GAACCTTGGC
AGCGACCAGA TCAGCGCACT GTGCGAAGAC GGCGCGCGGC CAACCGCCGA AGTGCTTGAG
GAGACCATCC GGCCGGTCCT CAGCAAACAC TTCAAGCCAG CGTTACTGGC ACGTATGCGC
GTAGTGCCGT ACTACCCGGT CAGCGGGCCG GTGCTACGCG AGCTGATCGA AATCAAACTC
GGTCGCCTGG GCGAGCGCCT GAACCGTCGT CAGCTGGAAT TCACTTACTG TCAGGACCTC
GTTGATCACT TGGCGCAGCG TTGCACTCAA AGCGACAGCG GTGCGCGTCT GATCGACCAT
CTGCTGGACC TTCATGTCCT GCCGCTGGTA GCTGACCGCC TGCTCGATGC TATGGCTACC
GGAGAAAGTC TGAAGCGTGT TCATGCCACG CTGGACACTT CCGGCACCGT GACGTGTGAG
TTTGCCTGA
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| Protein sequence | MSNVDLQQLI QALDAETRRD LESSAERCVA RGGSKILVED LLLELLERPQ GLLARALQDA
EVDAGELSAS LQSRVEHSAS RNPVFAPELV QWLQDALLVA NLELGQTQVE QAALILALLR
NPMRYAGSRY QPLLAKLNID RLKEFALSKQ EQPANGKSAA QGESLLERFT HNLTQQARDG
KLDPVLCRDG AIRQMVDILA RRRKNNPIVV GEAGVGKTAI VEGLASRIAA GEVPQALKGV
ELLSLDMGLL QAGASVKGEF ERRLKGVIDE VKASPKPIIL FIDEAHTLIG AGGNAGGSDA
ANLLKPALAR GELRTIAATT WAEYKKYFEK DPALARRFQP VQLHEPTVSE AVTILRGLAQ
VYEKSHGIYL RDDAVVAAAE LSARYLAGRQ LPDKAVDVLD TACARVRISL AAAPESLERL
RGELAEGGRQ RQALRRDAEA GLLIDHESLE ALETRLHAAE EERVALEAMW LEQKTLAERL
LELRQQLAKA REAVAAVPVV EIGEDDEGTV IEAVALDETQ SVEALTAALN DTHVALAALQ
VKERLVSFEV CPRLVAEVIS AWTGVPLAQL AREHNAKVAS FAKDLRIRIR GQEQAVHALD
RSMRATAAGL NKPDAPVGVF LLVGPSGVGK TETALALADL LYGGDRFITT INMSEFQEKH
TVSRLIGAPP GYVGYGEGGM LTEAVRQKPY SVVLLDEVEK ADPDVLNLFY QIFDKGVAND
GEGREIDFRN TLILMTSNLG SDQISALCED GARPTAEVLE ETIRPVLSKH FKPALLARMR
VVPYYPVSGP VLRELIEIKL GRLGERLNRR QLEFTYCQDL VDHLAQRCTQ SDSGARLIDH
LLDLHVLPLV ADRLLDAMAT GESLKRVHAT LDTSGTVTCE FA
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