| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_5407 |
|---|
| Symbol | |
|---|
| ID | 1187094 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | + |
|---|
| Start bp | 6138669 |
|---|
| End bp | 6141005 |
|---|
| Gene Length | 2337 bp |
|---|
| Protein Length | 778 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637396724 |
|---|
| Product | oxidoreductase, molybdopterin-binding protein |
|---|
| Protein accession | NP_795134 |
|---|
| Protein GI | 28872515 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0243] Anaerobic dehydrogenases, typically selenocysteine-containing |
|---|
| TIGRFAM ID | [TIGR01701] oxidoreductase alpha (molybdopterin) subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAGCATTC ATCATCAAGC CGACAAGACA CCTACACCCC GTTATAAGCC CTACAAAGGT
GCGGCGGGCG GCTGGGGCGC ACTGATCAGC GTGACGCAGG CCTGGCTGGG CAGTGACAAC
GCGCTGAAGA ACCTGCGCAT GATGCTCAAG ACCAATCAGA ACGGCGGCTT CGACTGCCCG
GGCTGCGCGT GGGGCGACTC GCCGGAAAGC GGCATGGTCA AGTTCTGCGA GAACGGTGCC
AAGGCGGTCA ACTGGGAAGC CACCAAACGC CGCGTCGATG CGGGCTTCTT CGCACGCTAC
AGCGTCAGCG CGCTGCTGGA ACAGAGCGAT TACTGGCTTG AGTATCAGGG TCGCCTGACC
GAGCCGATGG CTTACGACGC AGAAACCGAC CGTTACAAAC CCATCAGCTG GGACAGCGCG
TTTGCGCTGA TCGCCAAGCA CCTGAAGAAC CTGCCCAGCC CGAACATGGC CGAGTTCTAC
ACCTCGGGTC GTGCGAGCAA CGAAGCGGCG TACCTGTATC AACTGTTCGT GCGTGCCTAC
GGGACCAACA ACTTCCCGGA CTGCTCGAAC ATGTGCCACG AGGCCAGCGG CGTTGCCTTG
TCGCAAAGTG TCGGCGTGGG CAAAGGCACC GTGACCTTCG AGGATTTCGA ACACGCTGAC
GCTATTTTCG TCCTCGGCCA GAACCCCGGC ACCAACCACC CGCGCATGCT TGAGCCGCTG
CGTGAAGCGG TACAGCGTGG CGCGCAGGTG GTGTGCGTCA ACCCGCTGAA AGAGCGTGGG
CTTGAGCGTT TCCAGCATCC GCAACACCCG GTCGAGATGC TCACCAATGG TGACCGTCCG
ACCAACACGG CCTACTTCCG TCCTGCGCTG GGCGGCGACA TGGCGCTGTT GCGCGGCATG
GCCAAGTTCC TGCTGCAATG GGAGCGTGAT GCACAGCTGG CCAATGAACC GTCGGTTTTT
GATCACGCAT TCCTTAATGA ACACACCGAA GGCGTTCTCG AATACCTGGC GGCCATTGAT
GACACGTCCT GGGACGGGAT TGTCGAGCAG TCCGGTCTGA CCCTGGCTGA CATCGAGCAA
TCGGCGCGCA TGTATGCCAA GGGCAAGAAC GTCATCATGT GCTGGGCGAT GGGCATCACC
CAGCACCGCC ACTCGGTCGC GACCATTCAG GAAATCGCTA ACCTGATGCT GCTGCGCGGC
AATATTGGCC GTCCGGGTGC TGGCCTTTGC CCGGTCCGTG GCCACAGTAA CGTGCAGGGC
GACCGCACCA TGGGCATCAA CGAGCGCCCA CCGGTGTTCT TCCTGGATGC ACTGGAAAAA
CGCTTCCAGT TCAAAGTGCC GCGCGACAAT GGCCACAACG TGGTCGAAGC CATTCATGCC
ATGGCCGAGG GCCGCGCCAA GGTATTTATC GCGCTGGGTG GCAACTTCGC CCAGGCGACG
CCGGACAGCC ATCGCACCGC CGAGGCACTG AGCAGTTGCG ATCTGACGGT GCAAATCAGC
ACCAAACTCA ACCGTAGCCA CCTGTTCCAC GGCAAAGACG CGTTGATTCT GCCGTGTTTC
GGTCGTACCG ACATCGACAT CCAGGCCAAT GGGCCGCAAG CGGTCACCGT GGAAGATTCG
TTCAGCATGG TGCATGCGTC CAACGGCCAG TTGCAGCCGT CTTCGAAGCA GATGCGTTCG
GAGCCAGCGA TCATTGCCGG CATTGCCAAT GCCACACTGG GCAAAACGCC TGTGGACTGG
CTGTGGCTGG TTGAAGACTA CGACCGTATT CGCGACCTGA TCGCCGACAC CATTCCAGGC
TTCAAGGACT TCAACGAGCG CGTCAAGAAC CCGGGCGGCT TCTACCTGGG TAACGCAGCC
GGTTCCCGTC GCTGGAACAC GGCCTCGACT CGCGCCAACT TCAAGTCCAA TGCGCTGCCG
TTGAACCTGA TCCATGAAGA CATCAGTTCG ACCGGGCAGA TACCAGACCT GATCATGCAG
TCGATGCGCT CCCACGATCA GTACAACACC ACCATTTATG GCCTGGACGA CCGTTATCGC
GGTGTGAAAG GTCAACGTGA CGTGCTGTTC GTCAACGAAG CGGACATCAT TCGTCTTGGC
TTCCAGCCAG GTCAGAAAGC TGACTTGATC TCGATCTGGA GCGACAACCG CGAGCGTCGC
GTCAAAGGCT TCACGCTGTT GCCGTTCGAT ATTCCGGCGG GCCAGGCTGC GGCTTACTAC
CCGGAGGTCA ACCCGCTTGT GCCACTGGAA AGCGTCGGCG CCGGCAGCAG CACGCCAACG
TCGAAGTTCG TGGCCATTCG CCTTGAGCGT TCGGCAGAGT CGGCGCGGAT TATCTAA
|
|---|
| Protein sequence | MSIHHQADKT PTPRYKPYKG AAGGWGALIS VTQAWLGSDN ALKNLRMMLK TNQNGGFDCP
GCAWGDSPES GMVKFCENGA KAVNWEATKR RVDAGFFARY SVSALLEQSD YWLEYQGRLT
EPMAYDAETD RYKPISWDSA FALIAKHLKN LPSPNMAEFY TSGRASNEAA YLYQLFVRAY
GTNNFPDCSN MCHEASGVAL SQSVGVGKGT VTFEDFEHAD AIFVLGQNPG TNHPRMLEPL
REAVQRGAQV VCVNPLKERG LERFQHPQHP VEMLTNGDRP TNTAYFRPAL GGDMALLRGM
AKFLLQWERD AQLANEPSVF DHAFLNEHTE GVLEYLAAID DTSWDGIVEQ SGLTLADIEQ
SARMYAKGKN VIMCWAMGIT QHRHSVATIQ EIANLMLLRG NIGRPGAGLC PVRGHSNVQG
DRTMGINERP PVFFLDALEK RFQFKVPRDN GHNVVEAIHA MAEGRAKVFI ALGGNFAQAT
PDSHRTAEAL SSCDLTVQIS TKLNRSHLFH GKDALILPCF GRTDIDIQAN GPQAVTVEDS
FSMVHASNGQ LQPSSKQMRS EPAIIAGIAN ATLGKTPVDW LWLVEDYDRI RDLIADTIPG
FKDFNERVKN PGGFYLGNAA GSRRWNTAST RANFKSNALP LNLIHEDISS TGQIPDLIMQ
SMRSHDQYNT TIYGLDDRYR GVKGQRDVLF VNEADIIRLG FQPGQKADLI SIWSDNRERR
VKGFTLLPFD IPAGQAAAYY PEVNPLVPLE SVGAGSSTPT SKFVAIRLER SAESARII
|
|---|
| |