| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_5396 |
|---|
| Symbol | rfbB-2 |
|---|
| ID | 1187083 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | + |
|---|
| Start bp | 6128443 |
|---|
| End bp | 6129525 |
|---|
| Gene Length | 1083 bp |
|---|
| Protein Length | 360 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637396713 |
|---|
| Product | dTDP-glucose 4,6-dehydratase |
|---|
| Protein accession | NP_795123 |
|---|
| Protein GI | 28872504 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1088] dTDP-D-glucose 4,6-dehydratase |
|---|
| TIGRFAM ID | [TIGR01181] dTDP-glucose 4,6-dehydratase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGAATAC TCGTCACTGG GGGCGCGGGC TTCATCGGCT CCGCACTGAT CCGCCATCTG
ATAAACAACA CCGAACACGA CGTGCTGAAC TTCGACAAAT TGACCTACGC CGGCAACCTT
GAGTCGCTGC AGTCGATTGC GAGCAACACG CGTTATGAAT TCGTGCACGC CGATATTTGC
GATCAAGCCA AGGTCAGCGC AGTGCTGGAG CGGTTCGCGC CCCAGGCGAT CATGCACCTG
GCGGCCGAGT CCCACGTCGA CCGCTCCATC GATGGCCCGG CCGAGTTTGT GCAGACCAAC
ATCGTCGGCA CTTACAGCCT GCTGGAGGCC ACGCGCGCCT ATTGGCTGAA GCTGCCGGAC
GTCGAGCGTC AGGCGTTCCG CTTTCACCAT ATTTCCACCG ACGAAGTGTA TGGCGACCTG
CACGGTGTCG ATGATCTGTT CACTGAAACC ACGCCCTATG CGCCCAGCTC GCCTTACTCC
GCGAGCAAGG CTGCGTCCGA CCACCTGGTT CGCGCCTGGC ATCGCACTTA TGGCCTGCCG
GTGGTGGTGA CCAACTGTTC CAACAATTAC GGACCGTTCC ACTTCCCCGA AAAGCTCATC
CCGCTGGTGA TTCTCAACGC GCTGGCGGGC AAGCCACTGC CGGTATACGG CAACGGCCTG
CAAGTGCGCG ACTGGCTGTA CGTCGAAGAC CACGCGCGGG CGCTGCTCAA GGTCGTGACC
GAGGGCGACG TCGGTGAGAC GTACAACATT GGTGGCCATA ACGAGCAGAA GAACATCGAC
GTGGTGCGTG GCATCTGCTC ACTGCTCGAC GAGCTCGCCC CGCAGCATCC GGACGGCGTG
CAGCATTACA GCGACCTGAT CACCTATGTG GTTGATCGGC CGGGCCACGA TCAGCGCTAC
GCCATTGATG CCAGCAAGAT CGACAACGAG TTGGGCTGGA CGCCTGAAGA AACCTTCGAG
TCCGGGCTGC GCAAGACCGT GCAGTGGTAC CTGGACAACC TGGACTGGTG CCGCCGGGTT
CAGGACGGCA GTTATCAGGG CCAGCGATTG GGTTTTACTG ACCCGAAAGA CCTGATTGCC
TGA
|
|---|
| Protein sequence | MRILVTGGAG FIGSALIRHL INNTEHDVLN FDKLTYAGNL ESLQSIASNT RYEFVHADIC
DQAKVSAVLE RFAPQAIMHL AAESHVDRSI DGPAEFVQTN IVGTYSLLEA TRAYWLKLPD
VERQAFRFHH ISTDEVYGDL HGVDDLFTET TPYAPSSPYS ASKAASDHLV RAWHRTYGLP
VVVTNCSNNY GPFHFPEKLI PLVILNALAG KPLPVYGNGL QVRDWLYVED HARALLKVVT
EGDVGETYNI GGHNEQKNID VVRGICSLLD ELAPQHPDGV QHYSDLITYV VDRPGHDQRY
AIDASKIDNE LGWTPEETFE SGLRKTVQWY LDNLDWCRRV QDGSYQGQRL GFTDPKDLIA
|
|---|
| |