| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_5356 |
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| Symbol | gabP |
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| ID | 1187042 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 6088042 |
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| End bp | 6089433 |
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| Gene Length | 1392 bp |
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| Protein Length | 463 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 637396675 |
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| Product | gamma-aminobutyrate permease |
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| Protein accession | NP_795086 |
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| Protein GI | 28872467 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1113] Gamma-aminobutyrate permease and related permeases |
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| TIGRFAM ID | [TIGR01773] gamma-aminobutyrate permease |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCAGTA CCGCTAACTC TTCCGAGCTC GAACAAGGGC TGAAACCTCG ACACATTACG
ATGCTGTCGA TTGCCGGCGT CATTGGCGCT GGTCTGTTCG TCGGCTCCGG CCACGCGATT
GCCGAGGCCG GGCCAGCCGT GCTGTTGGCC TACGCCGCAG CGGGTACGCT GGTGGTGCTG
GTCATGCGCA TGCTGGCCGA AATGGCCGTT GCCTCGCCGG ATACCGGCTC GTTTTCGACC
TACGCCGACC GGGCCATCGG ACATTGGGCC GGCTTTACCA TCGGCTGGCT GTACTGGTGG
TTCTGGGTGT TGGTGATTCC GCTGGAAGCC AACGCCGCTG CGACCATTCT GCACGCCTGG
TTCCCCGACA TCGCCATATG GATGTTCACC CTGGTCATCA CATTGCTGCT GACCGCGACC
AACCTGTTCA GCGTGAAGAA CTACGGCGAA TTCGAGTTCT GGTTTGCGCT CATCAAGGTT
GTGGCGATCA TCGCCTTCGT GGTGCTGGGT GTTGCGGCCA TTTTTGGTTT GCTGCCGACC
AGTAGCGTGA GTGGCGTCAG TCATCTGTTC GACACCGGTG GTTTCCTGCC TAACGGCATG
GGCGCGGTGC TTGCTGCCAT GCTGACTACC ATGTTCTCGT TCATGGGCAC CGAGATCGTG
ACCATTGCGG CAGCCGAGTC CAGGAACCCT GGCAAGCAGA TCACCAAGGC CACCAATTCA
GTGATCTGGA GGATCTTCCT GTTCTATCTG GTTTCGATCT TCATCGTTGT GTCGCTGGTG
CCGTGGAATG ATCCGCGCCT GGCCGAGGTG GGTTCGTATC AGACCGTGCT GGATGCGATG
GGCATTCCGA ACGCCAAGCT GATTGTCGAT CTGGTGGTGT TGGTTGCCGT GACCAGTTGC
CTGAACTCGG CGCTGTATAC CGCTTCGCGC ATGCTCTTCT CGCTCGGCAA GCGCGGCGAT
GCACCGGCGT TGTCCAAGCG CACCAGCAAG GGCGGCACGC CATACTGGGC GGTGATCATG
TCGACTGCGG CGGCGTTCCT GACCGTATTT GCCAACTACG TCGCACCCGC TGCCGTGTTT
GACTTCCTGC TCGCCAGCTC CGGTGCCATT GCGCTGCTGG TGTATCTGGT GATTGCCGTT
TCGCAACTGC GGATGCGCCA GAAGCGCATT GCTGCAGGCG AGACCATCGA CTTCAAAATG
TGGCTGTTCC CATGGCTGAC CTGGGCGGCG ATTGCGTTCA TCGTTGCCGT GCTGACCATC
ATGTTGATCC AGCAAGAGCA CCGCGTCGAA ATCATCGCCA CCGGCGTGCT CAGCCTGCTG
GTGATCGGCG CCGGCCTGAT CGTCTCTCGT CGCCGCAAGG CCGGGCCCGT GGGCGCTGCT
GCACTGGGCT GA
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| Protein sequence | MSSTANSSEL EQGLKPRHIT MLSIAGVIGA GLFVGSGHAI AEAGPAVLLA YAAAGTLVVL
VMRMLAEMAV ASPDTGSFST YADRAIGHWA GFTIGWLYWW FWVLVIPLEA NAAATILHAW
FPDIAIWMFT LVITLLLTAT NLFSVKNYGE FEFWFALIKV VAIIAFVVLG VAAIFGLLPT
SSVSGVSHLF DTGGFLPNGM GAVLAAMLTT MFSFMGTEIV TIAAAESRNP GKQITKATNS
VIWRIFLFYL VSIFIVVSLV PWNDPRLAEV GSYQTVLDAM GIPNAKLIVD LVVLVAVTSC
LNSALYTASR MLFSLGKRGD APALSKRTSK GGTPYWAVIM STAAAFLTVF ANYVAPAAVF
DFLLASSGAI ALLVYLVIAV SQLRMRQKRI AAGETIDFKM WLFPWLTWAA IAFIVAVLTI
MLIQQEHRVE IIATGVLSLL VIGAGLIVSR RRKAGPVGAA ALG
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