| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_5043 |
|---|
| Symbol | |
|---|
| ID | 1186728 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | - |
|---|
| Start bp | 5743362 |
|---|
| End bp | 5743916 |
|---|
| Gene Length | 555 bp |
|---|
| Protein Length | 184 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 637396364 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | NP_794776 |
|---|
| Protein GI | 28872157 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG2314] Predicted membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.307475 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGACAAA CTCTTTCTTT TTTCGCGTCA ATCCCTTTAA CGACAAGGGC TTGGCGGCGT
GAAACCGACT CGTTTGCCAT ACGTCGGAAT AGGGAAACGA AGTCACAAAT TTGTTATGTA
TTTTTTTCTA TCAGCGCAAA GAGGGTAAAA ATGAACGGCT ATCGTTCTGA CACGCACAGC
AAAGTCATGG GCTACCTGAT GTGGATTTTC GGGTTTCTCG GTGCGCACCG TTTCTACTAT
GGCAAGCCGG TCACCGGGAC TATCTGGTTC TTCACCTTCG GCCTGTTCGG CATTGGCTGG
CTGATCGACC TGTTCCTGAT CCCGTCGATG GACCGCGAAG CCGACCTGCG CTTTACCCCC
GGCTCAACCG ATTACAGCCT GGCGTGGATC CTGCTGACCT TCCTCGGCCT GTTTGGCGTA
CACCGCATGT ACCAGGGCAA GTGGATCACC GGCATCATCT ACCTGTGCAC GGGCGGATTG
TTTCTGGTGG GCATTTTGTA TGACTTCTGG ACAATGAATG ACCAGATCTC GATGAAAAAC
GCCCAGCGCG GGTGA
|
|---|
| Protein sequence | MRQTLSFFAS IPLTTRAWRR ETDSFAIRRN RETKSQICYV FFSISAKRVK MNGYRSDTHS
KVMGYLMWIF GFLGAHRFYY GKPVTGTIWF FTFGLFGIGW LIDLFLIPSM DREADLRFTP
GSTDYSLAWI LLTFLGLFGV HRMYQGKWIT GIIYLCTGGL FLVGILYDFW TMNDQISMKN
AQRG
|
|---|
| |