| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_4954 |
|---|
| Symbol | |
|---|
| ID | 1186639 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | + |
|---|
| Start bp | 5614208 |
|---|
| End bp | 5615743 |
|---|
| Gene Length | 1536 bp |
|---|
| Protein Length | 511 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637396275 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | NP_794687 |
|---|
| Protein GI | 28872068 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCGACAG CACATGTAGC ACATCATCTG GTTCCCAAGA CGCTTGATGC CTGGGTCAAA
CAGCTTGACG GCATCGCGCT GCCGGTGCCG GCCGTCAATC ATGCTCACGT TCGTTCAGCG
TTGAACGACA GCCGCCGCTC GCTGCGTGAA ATCGCCGAAA TGATGCAGGA AAGCCCTGCG
CTGGTGCTCA GCGTGATGCG CGAGGCCAAT CATCACACTC ATGGCTTGAC CGAACAGGCC
GAGAGCCTCG AAATCGCGAT AAACCGTCTG GGGCTGGCGC GTACCGAAAC GCTTCTGGGA
CGCCTGCCGG CCAAACCGCC CGAGGAAATC CCGGCCGCCT ACCGACAGTT GATTCTGGTC
AGCCAGCACG CCACGCAACA GGCCAACGGG CTGTTTGCCA GCCGCCTTGC ACGGCTCTGG
CAGGACATCC ATATGGGCAG CCTGCTGTTT CTTTCGCCGC TGTGGCCGAT GGCGCTGGCT
TACCCGAAAC TGCTGGAAGA ACTGGAATTG CGGGTCATCC ACAAGGGCCA ATCCAGCCTT
GCGGTGGAAA AAGAGCTGTT TGGCGTCAAC CTGCTGGAAC TGTGCCTGGC CCTCGCCGAG
TTCTGGCGCC TGCCGATCTG GGTCACACGC GGCTACAAAC TGCTGATCAA TGAACGGCGC
GACCTGGCCA AGGTGCTGCG TATTTCTCGC GAAAAAAACA GCCCGCTGCA ACAGCAGCAA
CTGATGGACG CCGACCCGAA TCTGCGCCGC TGGCTGAATC AGCCGGCCAA CACCGTATTG
CTGGGCAACG GCCTGGCACT GGCGGCGCAA AATGCCTGGA ACAGCCCGCA CTGTCTGCGC
TGGGAGCGGC TGACCAGCCT GTACCTGCAG CAACCGCTCA GCGATGTGCA GCAGCAGGCG
CACCAGAACG CCGCCAGCAG CGCACGCATT CATTCGGAAA AAGACCTCTG GCACCCGGCC
GAATCGCTGA TATGGCCTTG GGACGCACGG CGCGTCAGAC GCGACAACGA ACCGGCACCG
CCGCCCTCGG CCGACGCCCT GCAACTGTGG CGCAAACATT GCGCCCAATT GCTGCAAGAA
CCCAGCCCGT TCATCAACGC TATGCACCTG ACCACCACCG CTCGCGACGC GTTCATGTCG
TGCGGCATGG AACGGGTCAT GCTGCTGATG CTGGACAAGA CCTCCACCGT GCTGCGCGTC
AATCAGACCG CCGGCCTGCC AGCGGAAGCG GCGGCCATGC AGCTGTTCAC CAAGGAAAGC
ACCGTACTGC AACGCCTGCT GACCCAACCG ACGCAGTTGC GCATGACGCC CGCCAACATT
GCGCAGTTTT CTGCGCTGCT GCCTGCGCCG CTAAAAACGC TGTTCAGTGG CCAGCACTGG
CTGATTCGCT CGCTGAGCAA CAACGGCAAG GTCATGTTGC TGGTGGTCGC CGATCAGGGT
GGAGGGGCCT TGTCGGAAAT TTCCGTTCAG GCCTTCGGAA AAACCGCGCA ATGCATTGAA
CGGGCACTTG GCATCTTTAG TCATCGCAAA GCGTGA
|
|---|
| Protein sequence | MSTAHVAHHL VPKTLDAWVK QLDGIALPVP AVNHAHVRSA LNDSRRSLRE IAEMMQESPA
LVLSVMREAN HHTHGLTEQA ESLEIAINRL GLARTETLLG RLPAKPPEEI PAAYRQLILV
SQHATQQANG LFASRLARLW QDIHMGSLLF LSPLWPMALA YPKLLEELEL RVIHKGQSSL
AVEKELFGVN LLELCLALAE FWRLPIWVTR GYKLLINERR DLAKVLRISR EKNSPLQQQQ
LMDADPNLRR WLNQPANTVL LGNGLALAAQ NAWNSPHCLR WERLTSLYLQ QPLSDVQQQA
HQNAASSARI HSEKDLWHPA ESLIWPWDAR RVRRDNEPAP PPSADALQLW RKHCAQLLQE
PSPFINAMHL TTTARDAFMS CGMERVMLLM LDKTSTVLRV NQTAGLPAEA AAMQLFTKES
TVLQRLLTQP TQLRMTPANI AQFSALLPAP LKTLFSGQHW LIRSLSNNGK VMLLVVADQG
GGALSEISVQ AFGKTAQCIE RALGIFSHRK A
|
|---|
| |