| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_4942 |
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| Symbol | hfq |
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| ID | 1186627 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 5601779 |
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| End bp | 5602039 |
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| Gene Length | 261 bp |
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| Protein Length | 86 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 637396263 |
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| Product | hfq protein |
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| Protein accession | NP_794675 |
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| Protein GI | 28872056 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1923] Uncharacterized host factor I protein |
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| TIGRFAM ID | [TIGR02383] RNA chaperone Hfq |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGTCAAAAG GGCATTCGCT ACAAGACCCT TACTTGAATA CCTTGCGAAA GGAGAAGGTC
GGCGTCTCGA TCTACCTGGT CAACGGTATC AAGCTGCAGG GAACGATCGA GTCTTTCGAC
CAGTTCGTCA TTTTGCTGAA AAACACTGTC AGCCAGATGG TCTACAAACA CGCCATTTCC
ACCGTCGTAC CGGTTCGCCC GATTCGCCTG CCTAGCGCTA CCGACGCTGA CGGCGCTGAC
GCCGAGCCAG GTAACGCCTG A
|
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| Protein sequence | MSKGHSLQDP YLNTLRKEKV GVSIYLVNGI KLQGTIESFD QFVILLKNTV SQMVYKHAIS
TVVPVRPIRL PSATDADGAD AEPGNA
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