| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_4844 |
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| Symbol | dinF |
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| ID | 1186527 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 5484381 |
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| End bp | 5485721 |
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| Gene Length | 1341 bp |
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| Protein Length | 446 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637396164 |
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| Product | DNA-damage-inducible protein F |
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| Protein accession | NP_794578 |
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| Protein GI | 28871959 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0534] Na+-driven multidrug efflux pump |
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| TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.8205 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCCACGT TGCTCAACGA CTGGCGTCAT CGCTCAACCC ATCGTCGTGT CTGGGCGCTG
GCGGCGCCGA TGATTCTGTC GAATATATCC GTGCCCTTGG TGGCGTTGGT CGACAGTGCG
GTGATAGGCC ACTTGCCGCA TGCCCATCAG TTGGGTGCCG TCGCCGTAGG CTCGACGCTG
TACACCTTTC TTGCCTGGGC AATGGGATTT TTGCGCATGG GCACCACCGG CTTTGCTGCG
CAGGCAGCCG GACGCAATGA CAGCGCGGCG TTGCGCCGGA TACTGCTGCA AGGTTTGCTG
CTGGCCGCCG GGCTGGCGTT GTTGCTGGGC GTGATCGCTT TACCGTTCAG TCACCTGGCG
CTGGCGATGA TGCAGCCGTC GGCCGATCTG CAACAGATGA CGCTGGATTT CTTCCACACC
CGACTGTTCG GTCTGCCCGC AGCCTTGGCC AGCTATGCGC TGGTCGGCTG GTTTCTCGGC
ACGCAGAACG CCAGAGCGCC GCTGGCCATT CTACTCGTCA CCAATCTGGT CAATATCGCG
CTCAACCTAT GGTTCGTGAT GGGCCTGGAC TGGGGCGTGG TGGGGTCGGC GCGTGCGTCG
GTGCTGGCGG AGTGGGCCGG TGTGGTGCTC GGTCTGCTGC TGGCCCGCAA GACCCTGCGC
GCCTGGCCCG GCCAGATTGT CTGGTCGGCG CTGAAACTGT GGAACAACTG GCGGCCGTTG
CTGGCGGTCA ATCGCGACAT CTTTCTGCGC ACGCTGGCGC TGCAATCGGT GATGTTTCTG
ATCACCGTGC AAGGCGCTCG TCTGGGTGAC GCTACGGTTG CCGCCAACGC GCTGCTGCTC
AACGGCCTGC TGCTGACGGC TCACGCGCTC GACGGCCTGG CGCATGCGGT TGAAGCGCTG
TGCGGCCACG CCATTGGCGC GCGTGACCGG GACACCTTGC GGCGTTCGCT GGTGGTGGCG
GGGGGCTGGT CACTGATCGC AAGCGTGGGG TTTGCGTTAT TGTTTCTGGT CGGTGGGCAC
GCCTTTGTCA GCTTCCAGAC GGACATCCCC GAAGTGCGCG CCACCGCCAT GACTTACCTG
CCGTATCTGG CGCTGATGCC CTTGCTGGCC GTCTGGAGTT ATCTGCTGGA CGGGCTGTTT
ATCGGTGCCA CGCGGGCCCG GGAGATGCGC AACGCGATGC TGGTCAGCGC GGCGGGCATC
GCGCCGGTCG CCTGGCTGGC GTCCAGCCAC GGCAACCACG CGCTATGGCT GACGTTTCTG
GCGTTCACCT TGCTGCGCGG CTTGAGCCTG GGGGCCATCG CCTGGCGTCT GACGCGCAGG
GACGGCTGGT TCGTTCACTG A
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| Protein sequence | MSTLLNDWRH RSTHRRVWAL AAPMILSNIS VPLVALVDSA VIGHLPHAHQ LGAVAVGSTL
YTFLAWAMGF LRMGTTGFAA QAAGRNDSAA LRRILLQGLL LAAGLALLLG VIALPFSHLA
LAMMQPSADL QQMTLDFFHT RLFGLPAALA SYALVGWFLG TQNARAPLAI LLVTNLVNIA
LNLWFVMGLD WGVVGSARAS VLAEWAGVVL GLLLARKTLR AWPGQIVWSA LKLWNNWRPL
LAVNRDIFLR TLALQSVMFL ITVQGARLGD ATVAANALLL NGLLLTAHAL DGLAHAVEAL
CGHAIGARDR DTLRRSLVVA GGWSLIASVG FALLFLVGGH AFVSFQTDIP EVRATAMTYL
PYLALMPLLA VWSYLLDGLF IGATRAREMR NAMLVSAAGI APVAWLASSH GNHALWLTFL
AFTLLRGLSL GAIAWRLTRR DGWFVH
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