Gene PSPTO_4564 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_4564 
Symbol 
ID1186247 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand+ 
Start bp5158217 
End bp5159185 
Gene Length969 bp 
Protein Length322 aa 
Translation table11 
GC content63% 
IMG OID637395905 
Productdipeptide ABC transporter, ATP-binding protein 
Protein accessionNP_794317 
Protein GI28871698 
COG category[E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism 
COG ID[COG0444] ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCACTTC TTGAAATCAA GAATCTCAAC GTCCGCTTCG GCGACGCCAA GGCCGTACCT 
GTTGTGGACG GCCTGTCCCT GAGCGTTGAC AGGGGCGAAG TACTGGCCAT CGTTGGCGAA 
TCGGGTTCCG GCAAGTCCGT GACCATGATG GCGCTGATGG GGCTGATCGA TTCCCCCGGC 
ATCATCACCG CTGACGCGCT CAATTTCGAC GGCAATGACC TGCTCAAGCT CAACTCCCGG 
CAGCGTCGCC GCATCATCGG CAAAGAAATG GCGATGGTTT TCCAGGACCC GATGACCGCG 
CTGAACCCCA GCTACACCGT GGGTTTCCAG ATCGAGGAAG TCCTGCGCCA GCACCTGAAC 
ATGTCGGGCA AGGCAGCCCG CCAGCGCGCG CTGGAGCTGC TGGAAAAAGT CGAAATCCCA 
GGCGCCGCTG CGCGTCTGAA TGCCTACCCG CACCAATTGT CGGGCGGCAT GAGCCAGCGT 
GTGGCGATTG CCATGGCCAT CGCCGGCGAG CCCAAGCTGC TGATCGCCGA CGAACCGACC 
ACCGCGCTGG ACGTGACCAT TCAGGCGCAG ATCATGGAAC TGCTGCTGAG CCTGCAAAAA 
GAGCAGGACA TGGCGCTGGT GCTGATCACG CACGACCTGG CGGTGGTGGC GGAAACCGCG 
CAGCGTGTTT GCGTGATGTA CGCCGGTCAA GCTGTTGAAG TGGGTCAGGT GCCAGGGCTG 
TTCGACGTCC CCGGTCACCC GTACAGCGAG GCTCTGCTGG CGGCCATTCC CGAGCACAGC 
ATGGGCGCCG AACGCCTCGC CACGCTGCCG GGCATGGTCC CGGGGCGTTA TGACCGTCCG 
CAAGGCTGCC TGCTGTCGCC GCGCTGCCCG TATGTGCGCG ACAACTGCCG AACCGAACGT 
CCCGGCCTGG ACCCCAAGGC GCATAGCCTG TCGCGCTGCT TTTATCCCTT GAATCAGGAG 
GTGGCGTAA
 
Protein sequence
MSLLEIKNLN VRFGDAKAVP VVDGLSLSVD RGEVLAIVGE SGSGKSVTMM ALMGLIDSPG 
IITADALNFD GNDLLKLNSR QRRRIIGKEM AMVFQDPMTA LNPSYTVGFQ IEEVLRQHLN 
MSGKAARQRA LELLEKVEIP GAAARLNAYP HQLSGGMSQR VAIAMAIAGE PKLLIADEPT 
TALDVTIQAQ IMELLLSLQK EQDMALVLIT HDLAVVAETA QRVCVMYAGQ AVEVGQVPGL 
FDVPGHPYSE ALLAAIPEHS MGAERLATLP GMVPGRYDRP QGCLLSPRCP YVRDNCRTER 
PGLDPKAHSL SRCFYPLNQE VA