| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_4374 |
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| Symbol | colR |
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| ID | 1186055 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 4936655 |
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| End bp | 4937338 |
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| Gene Length | 684 bp |
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| Protein Length | 227 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637395715 |
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| Product | DNA-binding response regulator ColR |
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| Protein accession | NP_794129 |
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| Protein GI | 28871510 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGCGAATTC TTCTGGTTGA AGACAACCGC GACATCCTGG CGAACATGGC CGATTATCTG
GGCATGAAAG GCTATACCGT CGATTGCGCC CAGGATGGCC TCTCCGGACT GCACCTGGCG
GCCACCGAGC ACTATGACCT GATCGTGCTC GACATCATGT TGCCCGGCAT TGACGGCTAC
ACGCTGTGCA AGCGGCTGCG CGAAGACGCC CGTCGCGATA CCCCGGTCAT CATGCTGACC
GCCCGCGACC AACTGGACGA CCGCCTGCAG GGCTTCCGCT CCGGTGCCGA TGATTACCTG
CTCAAGCCGT TCGCCCTGTC TGAACTGGCC GCGCGGATCG AAGCGGTGCT GCGTCGTGCC
CAGGGCGGGG GACGGCGTAC GTTACAGGTA GCCGATCTGG TGTATGACCT CGATACCCTT
GAAGTGACGC GCGAAGGTCG CATGCTCAAG CTCAACCCGG TCGGCCTGAA ACTGCTGGCC
GTGCTGATGC AGAAGAGCCC GCATGTGCTG CGCCGCGAAA TACTGGAAGA AGCCCTGTGG
GGCGACGATT GCCCGGACAG CGACAGCCTG CGCAGCCATG TGCACCAGTT GCGTCAGGTG
ATCGACAAAC CGTTTGGCAA ACCGCTGTTG CAGACCGTGC ACGGTGTGGG CTATCGCTTG
GCCGAGGGCC GGGATGGAGT TTAA
|
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| Protein sequence | MRILLVEDNR DILANMADYL GMKGYTVDCA QDGLSGLHLA ATEHYDLIVL DIMLPGIDGY
TLCKRLREDA RRDTPVIMLT ARDQLDDRLQ GFRSGADDYL LKPFALSELA ARIEAVLRRA
QGGGRRTLQV ADLVYDLDTL EVTREGRMLK LNPVGLKLLA VLMQKSPHVL RREILEEALW
GDDCPDSDSL RSHVHQLRQV IDKPFGKPLL QTVHGVGYRL AEGRDGV
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