Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_4208 |
Symbol | |
ID | 1185888 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | - |
Start bp | 4739826 |
End bp | 4742180 |
Gene Length | 2355 bp |
Protein Length | 784 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 637395554 |
Product | HAMP domain/GGDEF domain/EAL domain protein |
Protein accession | NP_793969 |
Protein GI | 28871350 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2199] FOG: GGDEF domain [COG2200] FOG: EAL domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAGTTTA AGGTCAGCTT TCAGGCGCGT ATCGCAGGGG TCCTGATTGC CCTGTTGCTG ATTGTGGTGG GTGCAGTCTT TCTCGCGGTC AAGGTTGCAA CCGGCGATGC AGTACGTACC CAGGCCCAGG CGCAACTGGA AGTGGGTAGC CGGGTGTTCG AGCGCCTGAT CGATTTGCGT GGCAAGCGCC TGCGGGACGC TGTGCAATTG CTCTCGGCCG ACTTCGGCTT TCGCGATGCA GTGGCGAGTG CCGACTCGTC GACCATTCGT TCGGTGCTGC TCAACCACGG CAAACGCATC AACGCCAGCG ACATGTTCCT GCTGGGCATG GATGGCGTGG TGATTGCCAG CACTGAAACC CAGGTGCCCG AAGGTTCGAG GTTTATCTAC GACCAGGCGC TGCGGGGCGC CAAGCGTTCC GGTCAGTCAG TGCTTATCGT CCCTGGCGGT GGAACACCCC ACCTGCTGGT AGAAAGTACC GTTCTGGCAC CGCTGCCCAT TGGCCGTGTG GTCATGGGCT TTACCATCGA CAGCGATATT GCCGAAGAGC TGCGTTCGCT CAGCGGGCTG GAAGTGTCTT TTCTCACGGT GGAAAACGGT CAGTCCGGCG ATTTGATCAG TACCCAGCCG CCAGCCATGC ATGCGGGTCT GGTCGAACTG ATGCGCAGTT CTTCAGAAGG GCAGATGCTG CTCACCGAGC AATCGAACCT TAACTTCCTC AGTCAGACGC TGATGCTTGC CAAAAGCGAC AATGGCGGTG ACGGACAAGT GATCGCGCTG CTGCAAAGCC CGCTGGACAA GGCCTATCAA GCGTTTGCGC CGCTGGATGA AAAGATTTTC TGGATTTCCA TGGCCGCCTT GCTGGCGTCG CTGATCGGCA CGCTGGCGCT GGCTCGAAGT GTCTCGCTGC CGGTACGCGC ACTGGCGACT GCTGCCAAAC GCATCGGTGA TGGCGACTAT GAAACGCCGG TCACGATGGC CCGCAGCGAC GAGTTGGGCA TGCTCGCCGA CGCGATCAAC ACCATGCAGC ACGGCATCGC CGTGCGTGAA GGGCAGTTGG CGCACAACGC GCTGCACGAC AACCTGACCG GGCTGCCCAA TCGAGCGTTG GTGATGGAGC GTCTGGGCAG TTCGATTGCG GCAGATCGCC CGGTGGCATT GCTGTACATG GGCATCGAGA ACCTTAAAAC GATCAGCGAG AGTTCGAATG CAGAGGGCGT TGATCAACTA TTGCGTCAGG TCGGTCAGCG CTTGCAGAGC AACTCGCGTG CTGGCGATAC CGTGGCACGC CTGAGCGCCA ACGAATTTTT GCTGTTGCTG GACAACACGG CCAGCGACGG CGCAGTCGGT ATTGCCGATG CCTTGCAACG CTTGCTCAGC GAGCCGCAGC GTATCGACAA CCATGACTAC GCGCTCGAAT GCTGCATCGG CATCACGGTT TATCCGGAAC ACGGTGATTC GGCCCAGGAA CTGGTCAACC GTGCGGCGAT TGCACGCAAG GACGCAACCT TCCTGCCCGG TCGTCTGCAG ATCTACCAGG ACGGGCGTGA TGTTGCTCAC CAGCGCCAGA TATGTCTGAT CCGCGACCTG CGCAAGGCTC CGCAGAATGG CGAGCTAATG CTCCATTACC AACCCAAACT GGATATTCGC CAAGGCTATG TTCGTCAGGC TGAAGCCCTG TTGCGCTGGA CTCACCCACG CTTCGGCAAT GTGTCGCCGG CCGAATTCAT TGTGCTGGCC GAGCGTACGG GCAGTATCAA CCTGCTGACA ACGTGGGTTA TCGAGGAAGC CATACGGCAA CTGGCCGAGT GGCGTCAGCG CGGTCTGGTG CTGCAGGTAT CGGTCAACAT TTCCGCGGAC GACTTGCTGG GCGACGACCT GGCCGGTTAT GTCATGAAAT TGCTCAAGCA GTACGGGCTG CCTGCTGAAC AACTGGTATT CGAGATCACC GAGAGCGCGG TCATGAGCGA GCCGGAAAAA GCCCTGGTGG TCCTGCACCG CCTGCGCGAC TGCGGCATCA GCCTGTCAAT CGATGACTTC GGCACGGGCT ACTCGTCACT GGCGCACTTG AAGCGCTTGC CGGTGCAGGA GCTGAAAATC GACCAGTCCT TCGTACGTGA TCTGGACGAG ACCAGCGAAG ACGCTGTGAT CGTGCGCTCG ACCATCGAGA TGAGCCATAA CCTGGGGCTC AAGGTGGTTG CCGAGGGTGT CGAATACCAA CACAGTCTGG ACCTGCTGCG GCGCTGGCAC TGCGATACGG CTCAGGGTTA CCTGATTAGC CGGCCGCTGA CGGCGGGTGC ATTCGAGGCA TGGATTGCTA CATACCAGAC ATCACCCAGT CTTATGGCGC ATTGA
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Protein sequence | MKFKVSFQAR IAGVLIALLL IVVGAVFLAV KVATGDAVRT QAQAQLEVGS RVFERLIDLR GKRLRDAVQL LSADFGFRDA VASADSSTIR SVLLNHGKRI NASDMFLLGM DGVVIASTET QVPEGSRFIY DQALRGAKRS GQSVLIVPGG GTPHLLVEST VLAPLPIGRV VMGFTIDSDI AEELRSLSGL EVSFLTVENG QSGDLISTQP PAMHAGLVEL MRSSSEGQML LTEQSNLNFL SQTLMLAKSD NGGDGQVIAL LQSPLDKAYQ AFAPLDEKIF WISMAALLAS LIGTLALARS VSLPVRALAT AAKRIGDGDY ETPVTMARSD ELGMLADAIN TMQHGIAVRE GQLAHNALHD NLTGLPNRAL VMERLGSSIA ADRPVALLYM GIENLKTISE SSNAEGVDQL LRQVGQRLQS NSRAGDTVAR LSANEFLLLL DNTASDGAVG IADALQRLLS EPQRIDNHDY ALECCIGITV YPEHGDSAQE LVNRAAIARK DATFLPGRLQ IYQDGRDVAH QRQICLIRDL RKAPQNGELM LHYQPKLDIR QGYVRQAEAL LRWTHPRFGN VSPAEFIVLA ERTGSINLLT TWVIEEAIRQ LAEWRQRGLV LQVSVNISAD DLLGDDLAGY VMKLLKQYGL PAEQLVFEIT ESAVMSEPEK ALVVLHRLRD CGISLSIDDF GTGYSSLAHL KRLPVQELKI DQSFVRDLDE TSEDAVIVRS TIEMSHNLGL KVVAEGVEYQ HSLDLLRRWH CDTAQGYLIS RPLTAGAFEA WIATYQTSPS LMAH
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