Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_4101 |
Symbol | hopAK1 |
ID | 1185781 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | + |
Start bp | 4621223 |
End bp | 4622890 |
Gene Length | 1668 bp |
Protein Length | 555 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 637395447 |
Product | type III helper protein HopAK1 |
Protein accession | NP_793862 |
Protein GI | 28871243 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG3866] Pectate lyase |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAATACGA TCAACAGAAA CATCTACCCC GTCTCCGGGA TTTCTGCGCA GGATGCCCCT GTACAAACTG ATCAGCTCCA GCCGCAAGGC CAGGGCATCA GGCCGGGGCA CAATAGCAAC CTGATCGACT TCGGACTGAT ACAGCAGGCC AATGGTCCGC ACTCATCGCT GAACACATCG AGCTCCAGAA TTCAGCCGAC TGACACCAGC ACATCCTCAA ACAGGCTGGG GGGTAATGGC GATCAGTTAC TGAACAAACT CGTGGAAGCG ATCCGTAATA TCCTCAACAA CCTGCTCTCT CTGCTGGAAG GCAATCAACA CCAGGGCTCT TCGCCTGCAC AGACCCAGCG TGAACAGACG CCGACGTCCA CTCAATCGCA CGCTTCGCCT TCCTCGTCGT CTTCATCTTC GCCGTCGACA TCCTCCCAGT CTTCACCCTC AGTGCCTTCA ACGCCTCAGG GCAACGCAGA AAAACCGTTT GTGGTGCAGA GCGATCATCC GGCGGAAAAA CCGGTATCGC TGCAGAGAAC CTCAGAGCCA ACGTCTGTGA CGCCGCCACA AACACCACCG CAGGCTGTCG AGCGAAACAG CATTACCCCG GACAAGGCAC CGGCCAAACC CGAAGCGGTA AAGCCGGCAG TGGTCAACGA CCCGGTGCTG CCGAAAACCT CGATCCCTGC CGCCGCCAAG CCTGACAGCA CGGTGACCGC CGCAAAACAC GCGACGCCCG CTGCCCGTGG CCAGGGCGCT GACATGTCCG GCATGATCGG TTTTGCCAAG GAAGCCAATA CCACCGGGGG CAACAACGGC GAAGTGGTCA CCGTGAACAC GGTTGCCGAC CTCAAGAAGT ACATGGAGGA CGACAAAGCC CGCACCGTCA AGCTGGGGGC CAACCTGTCT GCCGACAGTA AAGTGTCGAT AAATTTCGGG GCCAACAAAA CCCTGCTGGG CACCGATAAA GGCAACACCC TGCACAACAT CTATCTGGCC AGCGGCAAGA CCGCCAGCAA CGACATTTTC CAGAATCTGA ACTTCAACCA CGACGCCCGT TACCGTGAAA ACGGCGACAT GCAGATGTTC ATCAGCAGCG GTCAGAAATA CTGGATCGAC CACATCACCG CTACCGGAAC CAAGGATCAG AACCCCAAAG GTCTGGATAA ACTGCTCTAC GTGGGCGGCA AGGCAGATAA CGTCAGCCTG ACCAATTCGA AATTCCAGAA CAACGAGTAT GGCGTGATTC TCGGTCAGCC GGACGACTCG GCAGCCGCCA AAGCCGAGTA CAAGGGCTAC CCACGGATGA CAATCGCCAA CAACGTGTTC AGCAACCTCG ATGTCCGCGG GCCCGGTCTG TTTCGTCAGG GCCAATTTGA CGTAGTTAAC AACTCGATCG ACAAATTCCA CCTCGGTTTC ACTGCGACCG GGAACGCTAC CATCCTGTCG CAGGCCAACT ATTTCAGCAA CGGTGTCGAT GTTTCCAACA AGGCAAGTAA TAGCGGCGTG CTGGATGACT ACGGCGATGC GCACTTCAAA GACATCGGCA GTAACGTCAG TTTCACTCAG AAATCGCCGG TTACCGCCTG GACACCGAGC TACAACCGGG ACGTGAAAAC AGCCGAAGCA GCCAGAGCCT ATGACCTGGC CAATGCGGGT GCACAGGTCG TGAAATAA
|
Protein sequence | MNTINRNIYP VSGISAQDAP VQTDQLQPQG QGIRPGHNSN LIDFGLIQQA NGPHSSLNTS SSRIQPTDTS TSSNRLGGNG DQLLNKLVEA IRNILNNLLS LLEGNQHQGS SPAQTQREQT PTSTQSHASP SSSSSSSPST SSQSSPSVPS TPQGNAEKPF VVQSDHPAEK PVSLQRTSEP TSVTPPQTPP QAVERNSITP DKAPAKPEAV KPAVVNDPVL PKTSIPAAAK PDSTVTAAKH ATPAARGQGA DMSGMIGFAK EANTTGGNNG EVVTVNTVAD LKKYMEDDKA RTVKLGANLS ADSKVSINFG ANKTLLGTDK GNTLHNIYLA SGKTASNDIF QNLNFNHDAR YRENGDMQMF ISSGQKYWID HITATGTKDQ NPKGLDKLLY VGGKADNVSL TNSKFQNNEY GVILGQPDDS AAAKAEYKGY PRMTIANNVF SNLDVRGPGL FRQGQFDVVN NSIDKFHLGF TATGNATILS QANYFSNGVD VSNKASNSGV LDDYGDAHFK DIGSNVSFTQ KSPVTAWTPS YNRDVKTAEA ARAYDLANAG AQVVK
|
| |