Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_4062 |
Symbol | |
ID | 1185742 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | + |
Start bp | 4569320 |
End bp | 4570489 |
Gene Length | 1170 bp |
Protein Length | 389 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 637395409 |
Product | mandelate racemase/muconate lactonizing enzyme family protein |
Protein accession | NP_793824 |
Protein GI | 28871205 |
COG category | [M] Cell wall/membrane/envelope biogenesis [R] General function prediction only |
COG ID | [COG4948] L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGCGCATCG TAGACATTCG TGAAAAAACG GTTTCTATCG CCTCCCCGAT TGCCAACGCC TACATCGACT TTTCGAAAAT GACCTGCTCG GTCGTCGCGG TCATTACCGA TGTGATTCGC GACGGCAAAC CTGTTATCGG CTACGGTTTC AACTCCAATG GTCGCTACGG TCAGGGCGCG CTGATGCGTG ATCGTTTCCT GGCGCGTATT ACCGAAGCTG ACCCGGACAC GCTCATCGAC CATGCAAACA ACAACCTGGA CCCATTCGCC ATCTGGAAAG CCCTGATGAC CAACGAGAAG CCCGGCGGCC ACGGTGAGCG CTCGGTTGCA GTGGGCACCC TCGACATGGC GGTGTGGGAC GCTGTCGCCA AGATTGAAGG TAAACCTTTG TACCGGCTGC TGGCTGACCG CTACCGCGAC GGCGTGGCCG ACGACAAGGT CTGGGTCTAC GCAGCAGGTG GCTACTACTA CCCTGGCAAA GACCAGACCA AGCTCAAGGC AGAAATGCAG AGCTATCTGG ACCGTGGCTA CGACGTCGTC AAGATGAAGA TCGGTGCGGT GCCACTCGAC GAAGATATTC GTCGCATCGA AGCGGTGCTT GAAGTGGTTG GGGACGGTCG TCGGCTGGCG GTCGATGCCA ATGGTCGTTT CGATCTTCAG ACCGGTATTG CCTACGCCGA AGCCATCAAG AAGTACAACC TCTTCTGGTA CGAAGAGGTC GGTGATCCAC TGGACTACGC GTTGCAGGCC GAGCTTGCCA ATCACTATGA ACTGCCGATG GCGACCGGGG AAAATCTGTT CTCCCACCAG GATGCGCGCA ACCTCCTGCG CCACGGCGGC ATGCGCCCTG ATCGCGATTA CCTGCAATTC GACTGTGCGC TGTCTTACGG GCTTGTGGAA TACATGCGCA CCTTGAAGGT GATGGAAGAA ATGGGTTGGT CTTCCCGCCG CGTAGTGCCG CATGGTGGCC ACCAGATGTC CCTGAACATC GCAGCCGGCT TGCACCTGGG CGGCAACGAA TCTTACCCGG ATGTGTTTCA GCCTTTCGGC GGTTTTGCTG ACGGGATCAA GGTCGAGAAC GGTTATGTCG GCCTGCCGGA TATTCCAGGT GTCGGCTTCG AAGCCAAGTC CGCGTTGTAC GCCGTCATGC GCGAGTTGGG CGAAGGCTGA
|
Protein sequence | MRIVDIREKT VSIASPIANA YIDFSKMTCS VVAVITDVIR DGKPVIGYGF NSNGRYGQGA LMRDRFLARI TEADPDTLID HANNNLDPFA IWKALMTNEK PGGHGERSVA VGTLDMAVWD AVAKIEGKPL YRLLADRYRD GVADDKVWVY AAGGYYYPGK DQTKLKAEMQ SYLDRGYDVV KMKIGAVPLD EDIRRIEAVL EVVGDGRRLA VDANGRFDLQ TGIAYAEAIK KYNLFWYEEV GDPLDYALQA ELANHYELPM ATGENLFSHQ DARNLLRHGG MRPDRDYLQF DCALSYGLVE YMRTLKVMEE MGWSSRRVVP HGGHQMSLNI AAGLHLGGNE SYPDVFQPFG GFADGIKVEN GYVGLPDIPG VGFEAKSALY AVMRELGEG
|
| |