Gene PSPTO_3993 details

Gene Information

• Locus tag: PSPTO_3993
• Symbol: kup
• ID: 1185671
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudomonas syringae pv. tomato str. DC3000
• Kingdom: Bacteria
• Replicon accession: NC_004578
• Strand: -
• Start bp: 4503214
• End bp: 4505109
• Gene Length: 1896 bp
• Protein Length: 631 aa
• Translation table: 11
• GC content: 60%
• IMG OID: 637395342
• Product: potassium uptake protein
• Protein accession: NP_793757
• Protein GI: 28871138
• COG category: [P] Inorganic ion transport and metabolism
• COG ID: [COG3158] K+ transporter
• TIGRFAM ID: [TIGR00794] potassium uptake protein

Plasmid Coverage information

• Num covering plasmid clones: 12
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGTCAAA CAAACAGTCA TGCCCAGGCC GGAGGCACTG CGAAGCCCAT CGGGTTGTTG 
ATTGCAGCAG TGGGGGTAGT TTACGGCGAC ATCGGCACCA GCCCGCTGTA CACCCTCAAA 
GAGGTGTTTC AGGGCGGATA CGGCGTAGAA GTCACGCATG ACGCGATACT TGGGGTGTTG 
TCACTGATCT TCTGGTCGCT GATCTGGGTG GTTTCGTTCA AGTACATGGC GTTTGTTCTG 
CGTGCCGATA ACCAGGGTGA GGGCGGCATC ATGGCGCTGA TGGCGCTGGC GCGCAGGGCG 
TCGGCCAAAC ACCCCAAACT GCAAATGATG ATGGTGGTGT TCGGCCTGTT CGGTGCTGCA 
CTGTTCTATG GCGATAGCAT GATCACCCCG GCGGTGTCGG TTCTGTCGGC GATGGAAGGG 
CTGGAACTGG CGTTCGATGG CCTTGATCAC TGGATCGTGC CCATGGCACT GGTCGTGCTG 
GTGGGGCTGT TTCTGATTCA GCGCCACGGC ACGGCGCGCA TCGGCGTGCT GTTCGGGCCA 
GTGATGGTCG TCTGGTTTCT GGTGCTGGGC GCGCTGGGCG TTTACGGCAT CATGCAGTCG 
CCGGAAGTGC TGAAAGCGGT CAATCCGGCA TGGGGTCTGA ATTTCTTCAT TATCCATCCA 
GGGATCGGCG TTGCCATTCT GGGCGCTGTG GTCCTGGCGC TGACCGGCGC CGAGGCGCTG 
TACGCCGACA TGGGCCACTT CGGTCGCAAG CCCATCTCGC GTGCCTGGTT CATCCTCGTA 
TTGCCCGCGC TGTTGCTCAA CTATTTTGGT CAGGGCGCGC TGGTGCTGGG CAATCCGGAA 
ACAGTGCGTA ACCCGTTCTA CCTGCTGGCG CCGAGCTGGG CGCTGCTGCC ACTGATCGGC 
CTGTCGACGA TGGCGACCAT TATTGCCTCC CAGGCGGTCA TCTCCGGCGC GTTCTCGATG 
ACGCTGCAGG CCATCCAGCT GGGCTACATT CCACGGATGC ATATCCAGCA CACCTCCAGC 
GACGCGCAGG GCCAGATCTA TATCGGTGCC GTGAACTGGG CGTTGATGGT GGGTGTGATC 
ATGCTGGTGA TCGGTTTCGA GTCTTCCGGC GCGCTGGCCT CGGCCTATGG CGTGGCGGTA 
ACCGGGACCA TGCTCTGCAC CACTATTCTG GTCTCGACGG TCATGCTGAT GCTCTGGAAA 
TGGCCGCCGT TGCTGGCCGT TCCGCTGTTG ATCTGCCTGT TGCTGGTAGA CGGCCTGTTC 
TTTGCGGCCA ACGTGCCGAA GATCTTTCAG GGCGGTGCCT TTCCGGTGCT GGCAGGCGCG 
GTGTTGTTCA TCCTCATGAC CACCTGGAAG CGTGGCAAGC ACTTGCTGGC CGAGCGGATC 
GACGAAGGCG GGCTGCCGCT GCCAATCTTC ATTGGCAGCA TTCGCGTGCA GCCGCCGCAT 
CGCGTGCAGG GTACGGCGGT GTTCCTGACC GCGCGTTCGG ACGCTGTGCC TCATGCGTTG 
CTGCACAACA TGCTGCATAA CCAGGTGCTG CATGAGCAAG TGGTGCTGTT GACGGTGGTG 
TATGAAGACA CACCTCGCGT GCCTTCTGCG CAGCGCTTTG AAGTGGAGTC GTATGGCGAA 
GGCTTCTATC GGGTGATCCT GCACTTCGGC TTTATCGACG AGCCTGATGT GCCTGCTGCG 
TTGGCGCTGT GTCATCTGGC CGAGCTGGAC TTCAGTCCGA TGCGCACCAC CTACTTCCTC 
AGTCGCGAAA CCGTCATCCC GTCCAAGATG GATGGCATGG CGCGCTGGCG TGAAGCGCTG 
TTCGCCTTCA TGCTCAAGAA CGCCAACGGC AACCTGCGCT TCTTCAAGCT GCCGTTCAAC 
CGCGTGATCG AGCTGGGTAC GCAAGTGGAG ATGTAA 

 

Protein sequence

MSQTNSHAQA GGTAKPIGLL IAAVGVVYGD IGTSPLYTLK EVFQGGYGVE VTHDAILGVL 
SLIFWSLIWV VSFKYMAFVL RADNQGEGGI MALMALARRA SAKHPKLQMM MVVFGLFGAA 
LFYGDSMITP AVSVLSAMEG LELAFDGLDH WIVPMALVVL VGLFLIQRHG TARIGVLFGP 
VMVVWFLVLG ALGVYGIMQS PEVLKAVNPA WGLNFFIIHP GIGVAILGAV VLALTGAEAL 
YADMGHFGRK PISRAWFILV LPALLLNYFG QGALVLGNPE TVRNPFYLLA PSWALLPLIG 
LSTMATIIAS QAVISGAFSM TLQAIQLGYI PRMHIQHTSS DAQGQIYIGA VNWALMVGVI 
MLVIGFESSG ALASAYGVAV TGTMLCTTIL VSTVMLMLWK WPPLLAVPLL ICLLLVDGLF 
FAANVPKIFQ GGAFPVLAGA VLFILMTTWK RGKHLLAERI DEGGLPLPIF IGSIRVQPPH 
RVQGTAVFLT ARSDAVPHAL LHNMLHNQVL HEQVVLLTVV YEDTPRVPSA QRFEVESYGE 
GFYRVILHFG FIDEPDVPAA LALCHLAELD FSPMRTTYFL SRETVIPSKM DGMARWREAL 
FAFMLKNANG NLRFFKLPFN RVIELGTQVE M