| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_3785 |
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| Symbol | |
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| ID | 1185453 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 4287862 |
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| End bp | 4288419 |
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| Gene Length | 558 bp |
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| Protein Length | 185 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 637395135 |
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| Product | rhomboid family protein |
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| Protein accession | NP_793559 |
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| Protein GI | 28870940 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0705] Uncharacterized membrane protein (homolog of Drosophila rhomboid) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGCGTTTT CCAAACGACT CAAGGTCATC CTCGCCCTGT CGGCCGTGTT GATTGTGGTG
CAGGCAATCA ACTCGATCAC GGGCAATAGT CTGGTTCATT TCGGTATCAT TCCGCGCAGC
CTTGACGGGT TGCGCGGAAT TGTTTTTGCT CCCTTTCTGC ATGGCTCGAT TCAACACTTG
CTCAGCAACC TGTTGCCGTT CATTGTGCTG AGCTGGCTGG TGGCTACCGA GGGTGTCAGG
CGTTATGCCT GGGTCGCCGG GCTGATTTGC CTGCTGGGCG GGCTGCTGGT CTGGAGTTTT
GGTCGCAACA ATATCCATGT CGGCGCAAGC GGTCTGATCT TCGGTTTGTG GGCTTATCTG
CTGGCGCGGG CGTGGTATCA GCGCAGCCTC GCCAGCGTGC TGTTGGCGCT GATTGTGCTG
GCCGGTTACA GCGGGCTGGT TTTCGGCTTC GTGCCGGTGG CCGGTGTTTC GTTTGAATCA
CACATCGCCG GGGCGTTTGC CGGGGTTTGT GTGGCGTGGC TGATGCATTC CAGGGCATTG
CTGGCAGAAA AGGCCTGA
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| Protein sequence | MAFSKRLKVI LALSAVLIVV QAINSITGNS LVHFGIIPRS LDGLRGIVFA PFLHGSIQHL
LSNLLPFIVL SWLVATEGVR RYAWVAGLIC LLGGLLVWSF GRNNIHVGAS GLIFGLWAYL
LARAWYQRSL ASVLLALIVL AGYSGLVFGF VPVAGVSFES HIAGAFAGVC VAWLMHSRAL
LAEKA
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