| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_3760 |
|---|
| Symbol | |
|---|
| ID | 1185428 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | + |
|---|
| Start bp | 4257264 |
|---|
| End bp | 4258208 |
|---|
| Gene Length | 945 bp |
|---|
| Protein Length | 314 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637395110 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | NP_793534 |
|---|
| Protein GI | 28870915 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1721] Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.227641 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAACCCT ACCTGATCCC CCAGCCGGGC ATTCGTGTCA GCCTCAGCGA GCTGATCGAG
ATGCGTCATC GGGTACGGGA AGTGCAGCTG TTTTCCACGC CGAGCCGACG CAGCCCGTTG
ATCGGCCTGC ACCATTCCAA GCTGCGCGGG CGGGGTGTGG ACTTTGATCA GGTGCGCGTC
TATCAGGCGG GCGATGACGT GCGCAGCATC GACTGGCGCG TCACCGCCCG TACCCAGGAA
CCGCACACCA AGCTATTCCA TGAAGAGCGC GAGCGGCCGA TTTTCATTCT GGTGGAACAA
AGCCGCCGGT TGTTTTTCGG CTCCGGCCTG ATGTTCAAGT CGGTGCTGGC CGCTCAGGCT
GCCGCGCTGA TCGGCTGGGC CGCGCTGGAG CACAACGACC GGGTCGGCGG GCTGGTGTTC
GGCGATAACG AGCACTATGA AATCAAACCG CGACGCAGCA AGCAGAGCCT GTTGCAACTG
CTCAACCGCC TGGTGCGGGT CAACCAGTCG TTGCACACGG AAATCCCCGC CGACCGCGAT
GCCTTTGGTA CTGCATTGCG GCGCGCCCGC GAAGTGCTGC GCCCCGGCAG CCTGGTGATC
GTGCTGTGTG ATGAGCGCGC GCTGTCCGAT GTTGCCGAAC AACAGTTGAG CCTGCTCTCA
CGCCACAGCG ACCTGCTGTT GCTGCCGTTG TCCGACCCGC TGGACCGCGC CCTGCCTGCC
GCAGGCCTGT TGCGCTTTGC CGAGCGCGGC GCGCAACTGG AACTCGACAC CCTCAACCCC
GAGTTGCGCC GCGCCTATCG GCAACAGGGC GAAGACCGCT CTGCCCGCTG GGAATTGCTC
GCGCAAAAGC TGCGTGTATT GCTCATGCCC CTGAGCACGC AAAGCGAACT GGTAGAGCAA
CTGCGTGAAT ACCTCAACGC CCAGCGTCCG GTAAAACGCA AATGA
|
|---|
| Protein sequence | MQPYLIPQPG IRVSLSELIE MRHRVREVQL FSTPSRRSPL IGLHHSKLRG RGVDFDQVRV
YQAGDDVRSI DWRVTARTQE PHTKLFHEER ERPIFILVEQ SRRLFFGSGL MFKSVLAAQA
AALIGWAALE HNDRVGGLVF GDNEHYEIKP RRSKQSLLQL LNRLVRVNQS LHTEIPADRD
AFGTALRRAR EVLRPGSLVI VLCDERALSD VAEQQLSLLS RHSDLLLLPL SDPLDRALPA
AGLLRFAERG AQLELDTLNP ELRRAYRQQG EDRSARWELL AQKLRVLLMP LSTQSELVEQ
LREYLNAQRP VKRK
|
|---|
| |