| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_3735 |
|---|
| Symbol | |
|---|
| ID | 1185403 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | - |
|---|
| Start bp | 4219432 |
|---|
| End bp | 4221204 |
|---|
| Gene Length | 1773 bp |
|---|
| Protein Length | 590 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 637395085 |
|---|
| Product | ABC transporter, periplasmic substrate-binding protein, putative |
|---|
| Protein accession | NP_793509 |
|---|
| Protein GI | 28870890 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1653] ABC-type sugar transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.217509 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTCAATA AGAAAAACAA GCTGCAACAT AGCGTGACGC TGGCAACTAT GATCATGCTC
AGCGGGTTGA GTGTGTCGGC ATGGGCGGAT CAGTACGAAG AGAAGGCAAA GGAATGGGCG
GCCAAAGAGT TCAAGCCGAG TACGCTTTCC GATGCCGAGC AGTTGAAAGA GCTGGAGTGG
TTCATCAAGG CTGCCGAACC GTTCCGTGGC ATGGATATCA AAGTGGTGTC GGAAACCCTG
ACCACCCACG AGTACGAGTC GAAAACCCTG GCCAGGGCGT TCACTGAAAT CACCGGCATC
AAAGTCACCC ACGACCTGCT GCAGGAAGGT GATGTCATCG AGAAGCTGCA AACGGCCATG
CAGTCTGACA AGAGCATCTA TGACGGCTGG GTCAACGACT CAGACCTGAT CGGTACGCAC
TTTCGCTACG GCAAGGCCAT GTCTCTGACC GACCTGATGG CCAGCCCTGA AGGCAGCAAA
GTCACGTCTC CGACCCTGGA CCTGAAAGAC TTCATCGGCA CCTCGTTCAC CACCGCGCCG
GACGGCAAGC TCTATCAGTT GCCCGACCAG CAATTCGCCA ACCTGTACTG GTTCCGTGCC
GACTGGTTCG AGCGTCCTGA CCTGAAAAAG AAATTCAAGG ACAAATACGG TTACGAGCTG
GGCGTTCCGG TCAACTGGTC GGCTTATGAA GACATCGCCA AGTTCTTCAG TGAAGACGTC
AAGGAGATCG ACGGCAAGAA AGTCTTCGGC CACATGGATT ACGGCAAGAA AGACCCGTCG
CTGGGTTGGC GTTTCACCGA TGCCTGGTTC TCCATGGCGG GCAGCGGCGA CAAGGGCCTG
CCTAACGGTC TGCCGGTGGA CGAGTGGGGC ATTCGCGTCG AGGATTGTCA TCCGGTCGGT
TCCAGCATCA CCCGCGGTGG CGACACCAAC GGGCCAGCGG CAGTCTTCGC CACCCAGAAA
TACATTGACT GGCTGAAAGC CTATGCACCG CCGGAAGCGG CGGGCATGAC CTTCTCTGAA
TCCGGACCGG TGCCTTCGCA GGGTAACGTT GCGCAGCAGA TCTTCTGGTA CACCGCCTTC
ACTGCCGACA TGACCAAGCC GGGTCTGCCG GTCATGAACG CCGACGGCAC GCCGAAATGG
CGCATGGCAC CGTCGCCAAA AGGTCCTTAC TGGAAAGAAG GCATGAAGCT GGGCTATCAG
GACGTGGGTT CGTGGACCTT CCTGAAGTCT TCCGACGAGA AAAAACGTCT GGCGGCCTGG
CTGTATGCGC AGTTCGTGAC GTCGAAAAGC GTTTCGCTGA AGAAAACCAT CGTCGGCCTG
ACGCCGATTC GCGAGTCGGA CATCAACTCC AAGGAGATGA CCGCTCTGGC GCCAAAACTG
GGTGGCCTGG TGGAATTCTA TCGCAGCCCG GCGCGCGTTC AGTGGTCGCC AACCGGCACC
AACGTGCCTG ACTATCCGAA GCTGGCGCAA CTGTGGTGGA GCCACGTTGC CGAGGCGGTC
ACCGGCGAGA AAACAGCGCA GCAGGCGCTG GACGGTCTGG CCAAGGATCA GGATGCAATC
ATGACGCGCA TTGAGCGTTC CAAAGTGCAG GAAGCCAGCA AATGTGCACC GAAGATGAAT
CCTGAGACGT CGGCCGAAGA GTGGTATTCC AAGGCTGAGA AAAGCGGTGG CAAGTTCCTC
GCGCCACAAC GCAAGCTGGC CAACGAGAAA CCGAAGGGTG AAACCATCGC CTACTCCGAC
CTGCTGAAAA GCTGGGAAGC CGGCAAGAAG TAA
|
|---|
| Protein sequence | MFNKKNKLQH SVTLATMIML SGLSVSAWAD QYEEKAKEWA AKEFKPSTLS DAEQLKELEW
FIKAAEPFRG MDIKVVSETL TTHEYESKTL ARAFTEITGI KVTHDLLQEG DVIEKLQTAM
QSDKSIYDGW VNDSDLIGTH FRYGKAMSLT DLMASPEGSK VTSPTLDLKD FIGTSFTTAP
DGKLYQLPDQ QFANLYWFRA DWFERPDLKK KFKDKYGYEL GVPVNWSAYE DIAKFFSEDV
KEIDGKKVFG HMDYGKKDPS LGWRFTDAWF SMAGSGDKGL PNGLPVDEWG IRVEDCHPVG
SSITRGGDTN GPAAVFATQK YIDWLKAYAP PEAAGMTFSE SGPVPSQGNV AQQIFWYTAF
TADMTKPGLP VMNADGTPKW RMAPSPKGPY WKEGMKLGYQ DVGSWTFLKS SDEKKRLAAW
LYAQFVTSKS VSLKKTIVGL TPIRESDINS KEMTALAPKL GGLVEFYRSP ARVQWSPTGT
NVPDYPKLAQ LWWSHVAEAV TGEKTAQQAL DGLAKDQDAI MTRIERSKVQ EASKCAPKMN
PETSAEEWYS KAEKSGGKFL APQRKLANEK PKGETIAYSD LLKSWEAGKK
|
|---|
| |