Gene PSPTO_3564 details

Gene Information

• Locus tag: PSPTO_3564
• Symbol: gntV
• ID: 1185229
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudomonas syringae pv. tomato str. DC3000
• Kingdom: Bacteria
• Replicon accession: NC_004578
• Strand: +
• Start bp: 4022334
• End bp: 4022822
• Gene Length: 489 bp
• Protein Length: 162 aa
• Translation table: 11
• GC content: 62%
• IMG OID: 637394916
• Product: gluconokinase
• Protein accession: NP_793343
• Protein GI: 28870724
• COG category: [G] Carbohydrate transport and metabolism
• COG ID: [COG3265] Gluconate kinase
• TIGRFAM ID: [TIGR01313] carbohydrate kinase, thermoresistant glucokinase family

Plasmid Coverage information

• Num covering plasmid clones: 7
• Plasmid unclonability p-value: 0.00350968
• Plasmid hitchhiking: No
• Plasmid clonability: decreased coverage

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGGGGTTT CGAGCTGCGG CAAAAGTGCC GTCGGTGCAG AAATCGCCCG TAACAGCGGC 
GGTCGCCTGA TCGAAGGCGA TGCGTTCCAT CCCCAGGCCA ACATCGACAA GATGAGCGCC 
GGCACCCCCC TCACCGACGA AGACCGTGCC GGCTGGCTGA CCCGTCTGGG TGAAGAACTG 
GCCGCAGCCC TTGCCAAGGG CGAACATCCG GTGCTGACCT GTTCGGCACT CAAGCTCATT 
TATCGTGAAC GCCTGCGTGC GGCGGTGCCG GGCCTGGGTT TTGTCTTTCT CGAACTGAGC 
AAAGAGCTGG CCACCGAGCG TTGCGCCAAC CGGACCGGGC ATTTCATGCC TGCGAGTCTG 
GTCGATAGCC AGTTCGCGAC CCTGGAACCA CCGATCGGCG AGCCACTGAC CCTGGTGGTC 
GATGCCAGCA AGCCTATCGA TGTAATTGGT GAACAAGCCG CGGCATGGTG GAAAGGCTCT 
CACGCCTGA 

 

Protein sequence

MGVSSCGKSA VGAEIARNSG GRLIEGDAFH PQANIDKMSA GTPLTDEDRA GWLTRLGEEL 
AAALAKGEHP VLTCSALKLI YRERLRAAVP GLGFVFLELS KELATERCAN RTGHFMPASL 
VDSQFATLEP PIGEPLTLVV DASKPIDVIG EQAAAWWKGS HA