Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_3438 |
Symbol | iscS-3 |
ID | 1185103 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | - |
Start bp | 3878597 |
End bp | 3879778 |
Gene Length | 1182 bp |
Protein Length | 393 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 637394791 |
Product | cysteine desulfurase |
Protein accession | NP_793218 |
Protein GI | 28870599 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG1104] Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.134472 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAATGAGC CAGTGCTGTA TTTTGATTAC GCGGCTACCA CGCCCGTGGA CGAGCGAGTC ATCAAGGTGA TGGTCGAGTG CCTGGGTGCA TCGGGTAATT TCGGCAACCC GGCATCCAGC TCCCATTCAT TTGGGCAAAA CGCTCGCCGC GCGGTCGAGC ATGCTCGTGA GCAGGTTGCA GGTCTGGTAG GCGCTCAGGC TTCGCAGATC ATCTGGACGT CCGGCGCGAC CGAATCCAGC AACCTGGCGC TCAAGGGCGT GGCTCAGGAA CGCGCAAAAA GACTCGCAAG CCTGCCCGGT CATATCATTA CCAGTCAGAT CGAACACAAG GCTACCCTCG ATACTGCCCG GCAGCTCGAG GAGCAAGGCG TCGAGGTCAC CTGGCTGGCG CCGGACAGCG ATGGCCTGAT CACTGCCGAT GCGGTCAGCG CCGCGTTGCG CGATGACACG TTTCTGGTCT CGCTGATGCT GGTCAACAAC GAGTTGGGCA CGGTCAACAA TATTGCTGAA ATCGGCAGGC GCGTGCGCGG TCATGGCGCG CTGTTGCACG TTGATGCGGC GCAGGGTGCT GGCAAGTTGC CGATTGATCT GAGTCGGCTG GCGGTAGACC TGATGTCGTT CTCGGCACAC AAGATCTACG GCCCCAAGGG CATTGGTGCT TTGTACGTTG GCCCGCGTGC ACAACAGCGG GTTCTGGCCC AGATTCACGG GGGCGGCCAC GAATGCGGCT TGCGTTCAGG CACGTTGGCG ACGCATCAGA TCGCTGGAAT GGGCGCGGCC TTCGCCCTTG CGGCCGACGT GCTCGACGCT GAAGTTCTTG AAACAGAACG GCTGAATCGT CTTCTGCGCG AACGGTTGGC AGGGATTGCG GGGTTGTGTA TCAACGGCAG TCCGACGCAG CGGATTGCCC ACACGCTCAG CTTTACGTTC GGCAACAATG ATCTGGACCT CCCCGCGCTA GGCAAAACAC TCGCATTTTC TTCCACTTCC GCCTGCAACT CGGCGAAGAA TGTGCCTTCA CATGTCCTGC TGGCGTTGGG CCTGAGCCCG CAGGCTGCCA GCCAGACCAT CCGCTTGAGC CTGGGGCGCT TCACTCGCGA ACAGGATATC GAGCGTGCCG CCGAGTCTAT CCGCGCCTGC CTGATTCAGC CGGCATTCTG GGCGGTTGCT CAGTCTCGAT GA
|
Protein sequence | MNEPVLYFDY AATTPVDERV IKVMVECLGA SGNFGNPASS SHSFGQNARR AVEHAREQVA GLVGAQASQI IWTSGATESS NLALKGVAQE RAKRLASLPG HIITSQIEHK ATLDTARQLE EQGVEVTWLA PDSDGLITAD AVSAALRDDT FLVSLMLVNN ELGTVNNIAE IGRRVRGHGA LLHVDAAQGA GKLPIDLSRL AVDLMSFSAH KIYGPKGIGA LYVGPRAQQR VLAQIHGGGH ECGLRSGTLA THQIAGMGAA FALAADVLDA EVLETERLNR LLRERLAGIA GLCINGSPTQ RIAHTLSFTF GNNDLDLPAL GKTLAFSSTS ACNSAKNVPS HVLLALGLSP QAASQTIRLS LGRFTREQDI ERAAESIRAC LIQPAFWAVA QSR
|
| |