Gene PSPTO_3403 details

Gene Information

• Locus tag: PSPTO_3403
• ID: 1185063
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudomonas syringae pv. tomato str. DC3000
• Kingdom: Bacteria
• Replicon accession: NC_004578
• Strand: -
• Start bp: 3843532
• End bp: 3844095
• Gene Length: 564 bp
• Protein Length: 187 aa
• Translation table: 11
• GC content: 62%
• IMG OID: 637394754
• Product: baseplate assembly protein V
• Protein accession: NP_793186
• Protein GI: 28870567
• COG category: [R] General function prediction only
• COG ID: [COG4540] Phage P2 baseplate assembly protein gpV
• TIGRFAM ID: [TIGR01644] phage baseplate assembly protein V

Plasmid Coverage information

• Num covering plasmid clones: 20
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGTTACG CCTCAGCTGA ACATGACCGC ATGCTGGCCG GTGTTGTGAA GGATTGCTAT 
GTCGTTGCAC TGGACCTGGC CGCGTCACCT CCGGTATGCC GCGTTTCGGA TGGTGATTGG 
GTCAGCGCCT GGGTTCGCTG GCACAGCGTT GCGGCCGGCA AGGCAAGGCA CTGGCGGGCA 
CCGACCCTTG GTGAGCAGGG CACGTTGCTC AGTGCCAGCG GTGACGTGTC GCAAGGCACA 
TTCATTCCTG GGCTGTATGG CAATGCCGGT GCCCAGCCTG ATAACCGCGA CCATGTCGAA 
GTCTGGCGCT TTGACGACGG CGGCTCCCTG ATCTACGACT GGCAGGCCAA GACGTACACG 
ATTGATCTGC CTGGCGGAAC GGTGACGATC AAGGTCGGGG CCAGCTCGGC CGTCGTTACC 
GACAGTGCGA TCACCGCAAA AGCCGCCACG ATCACCTTGG ATGGCAATGT CACGATCAGC 
GGAACGCTCG CCGTCGCCGG TGATATTCGC GGCGGGGGCC AGATCATCGA TACCGGTGGC 
AACACTGCCA ACCACAAGCA CTGA 

 

Protein sequence

MSYASAEHDR MLAGVVKDCY VVALDLAASP PVCRVSDGDW VSAWVRWHSV AAGKARHWRA 
PTLGEQGTLL SASGDVSQGT FIPGLYGNAG AQPDNRDHVE VWRFDDGGSL IYDWQAKTYT 
IDLPGGTVTI KVGASSAVVT DSAITAKAAT ITLDGNVTIS GTLAVAGDIR GGGQIIDTGG 
NTANHKH