Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_3386 |
Symbol | |
ID | 1185046 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | - |
Start bp | 3826104 |
End bp | 3828458 |
Gene Length | 2355 bp |
Protein Length | 784 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 637394737 |
Product | hypothetical protein |
Protein accession | NP_793169 |
Protein GI | 28870550 |
COG category | [R] General function prediction only |
COG ID | [COG4928] Predicted P-loop ATPase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.256029 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCCTGCTC CGTTGAAGCA GCTCAGCTGG TCTGTGGGGT GTCGGGAGAT CGGGCGAAAT TGCGCCATCA GCTTTATCGA TGCCCTAGTC AATAGTTTGC TAGCTTTCCG GATTGCAAAA AGGCACACAA AGCTCGCGTC TGAATGCACT TGGTCCCAAG GAAGAATTGA TTTTATGTCG GAAAATTTAA ACCACACCGA GCGTCAAGAC CGCGCTATTA CAGCGCCTGA ATTCGATGCG TTGGGGCGAG CCCCGTTCAT ATCCAGCCTA GTCAAGACGC TTGTTCACAC CGACTACGAC ACGAGCACAG GTGAGGTGCG CTCGCGACGG GCGACTGGAT TCGTGGTAGG TCTTACGGGA GAGTGGGGGT TAGGTAAGTC CAGTGTTTTA AATCTGCTTG AACATGACCT CAAGCAGATG GAGCACGTGG CTGTAGCGAC TCTGAACCCT TGGCTCTTCA AAGGCCGAGA TGAGGTTGTG GAAGCATATT TCAATGCTTT GCGTGAGGCC CTTGGCTTCA GTTCCAGTGA AAAAGCTCGA AAGCTATTAG TGCATTTGGC GCGGTACAAA GCCTCAATCG AATTTGTGGG CGCTACAACC GCGGTTGTCA TTGACTTTGT AGTTGGAACA GGCTCTGCGA CAGCGATCTG GAAAAAATGG GTTCTAAAGG TTGTTCGTTT CCTTAGCAAG TCAAGGGGGC TGTCGGCGAA CGAAGAGCGG AAGAATCTCG AGGCAAAGCT GGCAGAAGCC AAGATAGCTA TTGTGATGCT GATAGACGAA CTAGATCGTG TCGAGGATGA GGAAGTCCGA GTAGTTGCCC AGCTTGTAAA AGCGGTAGGG GATATCAAGG GCATTTCTTA CCTTGTAGCT TACGATCCCA GTCGTGTGGC TCAGGCATTG GGCAAAGGCA GTACGCCTGA AGAGAAGCAA AAAGCTGGTG AAAGCTATCT TGAGAAAATT ATCCAGTTCC CCATCCCACT TCGCCCTTTG TTTATGGACG AGGCCCGCGA CCTGCTGCTT CAAGCTATGC GTAATAACGA TGTGACAATG CCCGCAGAAA GCCAGTCCTA CCAAACTGAA ATTCTCAATC AGCTGCTTAG GGTTATTCGT ACACCTCGGG AGATCAAACG ACTGATTGGA GCGTTTGCCG TGCTGGAGGA AATTGTACGT GGCGAGATCT GTCCGTTTGA CGTGCTGGCG TATAGTTGGT TGGTTACCAA GGCTCCAAGT CTCCGAGAGC GTATTGCTGA TAACATCGGC CAACTCGTGG ATGATCCGAG CGGTGAAGAA ATGCTCGCTC GTCAGCGCCA GCGAGCCCTG GCGACCGACA AGGAGCGCAC TCTGACTGAT ATTCTCGGGA GTTCTGCAGT AAGCCATCTT GATATCTTGC AGTTGCTATT TACCCGGTTC AATGCACGGC GCGAGGGATC TGCGGAGTTT TTCAATGGCT ATAGGCTTGC CTTGCGTCGA AATCTTATCC GGCTACTTTA TCTCGGGAAC CCTCCTGGGG ATTTCTCAAG AAGGGATATC GAAGTGCTTT GGTCGCTCAC CAACGTAGAT GAGTTGGAAG CAGAACTAAG GCGTGTTAAA GAAACCGATC GACTTGGTCC TCTGTTAGAT CGAGTCGGAG ATTTTTCGGC AAGCTTTCCG GAAGCGGGTG ATGGCATTTT CTGGTTAGCG CTTGGCCGTG CTCTTGTCAG AGAAAATGAT TGGATTAGAC GAGAAGAGGT CGAGCGGAGC TTGGTAGACG ATGCATGCGC CACTCTCTGG CGAATTGCTC GAGACGGTTC TGAAGGATCC AGACGTTTAA GGCATATAGT GCATGTATTG ATTGAAGGGG GAGATCTTTT GATCGTCCCT TGGCTGTTAA GGAAACATCT CTTCGCTCAT GGGCTGACTA ACCATGGTGA TCGAGGTAGA GGGGATTGCA TTTTTGAAAA AGACGAAACC ATAGCGCTGC GTGATAAGGA ACTGCCCAGG TACCACGATG CCGTGGCGGA TGGTACTGCG CTGAAGAAAC TCCCCGACAC AGAACTGATT TTTTGTGTAT TGAACAGTAA CTACTGGGAT TCGAAGCTTA AGGAAGACTT TACATTGCAG CTGGATAGCA TAGAAGCGAT TGTCTCGTTT GCAGCGTTGA TAATGCCGCC TGGCATTATT TGTGATAAGA GCACTCTCGA TCTAATGCTT GAGACAGACA CCGTCTTGAA AAAGGCCAAT GCGCTTCTGC GCCAGAGTGG TATGCCTGAA TCTGACTGGT TGGCCTCCGC TGTCCGTCGG CTTCGCACAG TCCTTGCAGG TCGTGATATA CATTCAGCAG ATACGCTGCG AGATGACTTT GACCAAGAAG AGTGA
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Protein sequence | MPAPLKQLSW SVGCREIGRN CAISFIDALV NSLLAFRIAK RHTKLASECT WSQGRIDFMS ENLNHTERQD RAITAPEFDA LGRAPFISSL VKTLVHTDYD TSTGEVRSRR ATGFVVGLTG EWGLGKSSVL NLLEHDLKQM EHVAVATLNP WLFKGRDEVV EAYFNALREA LGFSSSEKAR KLLVHLARYK ASIEFVGATT AVVIDFVVGT GSATAIWKKW VLKVVRFLSK SRGLSANEER KNLEAKLAEA KIAIVMLIDE LDRVEDEEVR VVAQLVKAVG DIKGISYLVA YDPSRVAQAL GKGSTPEEKQ KAGESYLEKI IQFPIPLRPL FMDEARDLLL QAMRNNDVTM PAESQSYQTE ILNQLLRVIR TPREIKRLIG AFAVLEEIVR GEICPFDVLA YSWLVTKAPS LRERIADNIG QLVDDPSGEE MLARQRQRAL ATDKERTLTD ILGSSAVSHL DILQLLFTRF NARREGSAEF FNGYRLALRR NLIRLLYLGN PPGDFSRRDI EVLWSLTNVD ELEAELRRVK ETDRLGPLLD RVGDFSASFP EAGDGIFWLA LGRALVREND WIRREEVERS LVDDACATLW RIARDGSEGS RRLRHIVHVL IEGGDLLIVP WLLRKHLFAH GLTNHGDRGR GDCIFEKDET IALRDKELPR YHDAVADGTA LKKLPDTELI FCVLNSNYWD SKLKEDFTLQ LDSIEAIVSF AALIMPPGII CDKSTLDLML ETDTVLKKAN ALLRQSGMPE SDWLASAVRR LRTVLAGRDI HSADTLRDDF DQEE
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