| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_3329 |
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| Symbol | tliE |
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| ID | 1184987 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 3765280 |
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| End bp | 3766533 |
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| Gene Length | 1254 bp |
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| Protein Length | 417 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637394679 |
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| Product | ABC transporter, periplasmic substrate-binding protein |
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| Protein accession | NP_793112 |
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| Protein GI | 28870493 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01843] type I secretion membrane fusion protein, HlyD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.40218 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTCGCGG GGGCGGGCAG TTTCTTTCTC TGGGCCAGCC TGGCGCCACT TGATCAGGGC
ATTGCCGTGC AGGGCACGGT GGTGGTTTCG GGCAAGCGCA AGGCCGTGCA GTCGCTCGAC
GGTGGCGTGG TGAGCAAGAT TCTCGTCAGC GAAGGCCAGT TGGTCAAAGA AGGCGAGCCG
CTGTTTCGTC TTGATCAGAC GCAGGTCCAG GCGGATGTGC AATCGCTGGG CGCTCAATAC
CGCATGGCCT GGGCCAGCCT GGCCCGCTGG CAAAGCGAGC GCGACAATCT GGATGAGGTG
CGCTTCCCCG CAGAACTGAT CGCCGCCGGG CAGGGCCAGA ATCCTGACCC GCGTCTGGCC
CTGGTGCTTG AGGGGCAGCG CCAGTTGTTC AGCAGCCGTC GTCAGGCACT GGCGCGCGAG
CAATCCGGTT TGCAGGCGAG CATTGAAGGT GCCGGGCTGC AACTCGCCGG CATGCGTCGC
GCGCGTTCGG ACCTATTGGC CCAGGCCGAA TCATTGCGTC AGCAGCTGCG TAACCTGGAA
CCTCTGGCGC AAAACGGCTT CATTCCGGGC AACCGCCTGC TGGAGTTCCA GCGCCAGTTG
TCTCAAGTGC AGCAGAGCCT GGCGCAGAAC GCAGGCGAAA CCGGGCGCAT AGAGCAGGGC
ATCGTCGAAT CGCGGCTGCG CCTTCAGCAG CAGCGCGAGG AATACCAGAA AGAGGTGCGC
AGCCAATGGG CCGATGCCCA GGTCAAGGCG CTTACCCTTG AGCAGCAACT GGCGTCGGCA
GGTTTCAGTC TGCAGCACAG CGCCATTCTT GCGCCTGCCG ATGGCATCGC TGTGAACATG
GGCGTGCACA CCGAAGGCGC TGTGGTGCGG GCCGGTGAAA CCTTGCTGGA GATCGTTCCG
CAAGGCACCC GACTGGAAGT CGAAGGGCGT TTGCCGGTGC AGTTGATCGA CAAGGTCGCC
AGCCATTTGC CGGTCGACAT CCTCTTTACC GCGTTCAATC AGAGCCGCAC ACCTCGGGTG
GCCGGCGAAG TGAGCCTGAT TTCCGCCGAC CAGATGCAGG ATGAAAAAAC CGGTCAGCCG
TATTACGTAC TGCGTACCTC GGTGGGTGAT GCCGCACTGG AAAAACTCAA CGGTCTGGTG
ATCAAGCCGG GCATGCCCGC TGAAATGTTC GTGCGCACGG GTGAACGCTC GCTGCTCAAC
TACCTGTTCA AACCTTTGCT GGACCGTGCC GGCTCCGCGT TGACGGAGGA ATAG
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| Protein sequence | MLAGAGSFFL WASLAPLDQG IAVQGTVVVS GKRKAVQSLD GGVVSKILVS EGQLVKEGEP
LFRLDQTQVQ ADVQSLGAQY RMAWASLARW QSERDNLDEV RFPAELIAAG QGQNPDPRLA
LVLEGQRQLF SSRRQALARE QSGLQASIEG AGLQLAGMRR ARSDLLAQAE SLRQQLRNLE
PLAQNGFIPG NRLLEFQRQL SQVQQSLAQN AGETGRIEQG IVESRLRLQQ QREEYQKEVR
SQWADAQVKA LTLEQQLASA GFSLQHSAIL APADGIAVNM GVHTEGAVVR AGETLLEIVP
QGTRLEVEGR LPVQLIDKVA SHLPVDILFT AFNQSRTPRV AGEVSLISAD QMQDEKTGQP
YYVLRTSVGD AALEKLNGLV IKPGMPAEMF VRTGERSLLN YLFKPLLDRA GSALTEE
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