Gene PSPTO_3079 details

Gene Information

• Locus tag: PSPTO_3079
• ID: 1184736
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudomonas syringae pv. tomato str. DC3000
• Kingdom: Bacteria
• Replicon accession: NC_004578
• Strand: +
• Start bp: 3461451
• End bp: 3462107
• Gene Length: 657 bp
• Protein Length: 218 aa
• Translation table: 11
• GC content: 61%
• IMG OID: 637394439
• Product: hypothetical protein
• Protein accession: NP_792873
• Protein GI: 28870254
• COG category: [G] Carbohydrate transport and metabolism; [M] Cell wall/membrane/envelope biogenesis
• COG ID: [COG0451] Nucleoside-diphosphate-sugar epimerases

Plasmid Coverage information

• Num covering plasmid clones: 20
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCCAGAG TTTTTGTCAT CGGGGCTGCA GGCAAGGTTG GCCAGCGCCT TATAAAAAAA 
CTTGGCGACG GCGGTCATGA AGTGATCGCC TTGCACCGCA AGGAGGAGCA ATCGGTGCTG 
ATCAAGGCAG CCGGCGCCCT GCCCTTGCTC GCAAACCTCG TCGAGATGGA TGCAGCTGCG 
CTGTCCAGCG CAATGGCGGG CAGTGACGTG GTGGTTTTCA CCGCCGGGGC TGGCGGTGCA 
GGCATTGAGC TGACCAACGC CATTGACGGT GAAGGGCTGA AAACTTCGGT TGCAGCCGCT 
GAACTCGCCG GCGTGCGGCG TTTCCTGCTG GTGTCGGCAT TTCCCGAAGC CGCCCGCGGT 
ACAGACACGT CAGCGGGCTT CGAGAATTAC ATGCGGGTCA AGAAACACGC CGATGTATGC 
CTGGCATCGT CCGAACTGGA CTGGGTCATT CTCAGGCCAG GCACCTTGGT CGATAGCGCA 
GGTTCGGGCC AGGTCCGCGC AGGTCTGGCC ATTCCGTATG GCGACATCCC GCGCGATGAC 
GTAGCGGCTT TTCTGGCAGC ACTGGTCGAC CAGCCTGAAA TATCCCGACA GATCATCGAA 
CTTACCGAAG GCACCACGCC TGTCGAGCTG GCTATAAAAG CCCTCGGCAC GCGCTGA 

 

Protein sequence

MSRVFVIGAA GKVGQRLIKK LGDGGHEVIA LHRKEEQSVL IKAAGALPLL ANLVEMDAAA 
LSSAMAGSDV VVFTAGAGGA GIELTNAIDG EGLKTSVAAA ELAGVRRFLL VSAFPEAARG 
TDTSAGFENY MRVKKHADVC LASSELDWVI LRPGTLVDSA GSGQVRAGLA IPYGDIPRDD 
VAAFLAALVD QPEISRQIIE LTEGTTPVEL AIKALGTR