| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_2949 |
|---|
| Symbol | |
|---|
| ID | 1184603 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | - |
|---|
| Start bp | 3313545 |
|---|
| End bp | 3314312 |
|---|
| Gene Length | 768 bp |
|---|
| Protein Length | 255 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637394309 |
|---|
| Product | oxidoreductase, short-chain dehydrogenase/reductase family |
|---|
| Protein accession | NP_792746 |
|---|
| Protein GI | 28870127 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.084933 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACCTGA CTAACAAAAC ACTGATCGTG ACGGGCGTGT CCTCCGGCAT CGGCGCTGAG
CTGGCGCGTC TGGCGCGTTT TCAGGGCGCC AGGGTGATCG GCATTGATCG CCATGAGCCG
CAGCTGACCG TGGACGGATT TTTCCAGGCG GACCTGGGCG ACCCTGAGAG CATCGATGCG
CTGGTCGAGC GCCTGCCGAT GCACATCGAT GCGCTGTGCA ACATTGCCGG TGTACCCGGC
ACGGCGCCGG TGCAGGCGGT GGCTCAGGTC AATTATCTCG GCCTGCGTCA TTTGACCCAG
CGTCTACTGC CACGCATTGC GCCGGGCGGC AGCATTGTCA ATATGTCATC GATACTCGGT
TCGCAGTGGC CTGAACGGCT GGAACTGCAC AAGGCACTGG CCGCCACCGA AAGCTACAGC
GAAGGGCAGC AGTGGTTAGC GTCCAACCCG GTCGCACCGG GCACCTGCTA TCAGTACTTC
AAGGAGGCGC TGATTGTGTG GAGCTATCAG CAGTCGCAAG CGTGGTTTCG AGACCAGTCC
GTGCGCGTCA ACTGTGTGGC GCCGGGGCCG GTGTTTACCC CGATTCTGGG CGATTTTGTG
AGTATGGTCG GCGAAGAGCG GGTCGCCCGC GACAGTCTGC ACATGAAACG ACCCGCGCTG
GCCGATGAAG TGGCGGCGGT GATTGCGTTT CTCTGCTCCG ATGCGTCGCG CTGGGTCAAC
GGTGTGAACC TGCCGGTAGA TGGAGGGCTT GCTGCTTCTT ACGTCTGA
|
|---|
| Protein sequence | MNLTNKTLIV TGVSSGIGAE LARLARFQGA RVIGIDRHEP QLTVDGFFQA DLGDPESIDA
LVERLPMHID ALCNIAGVPG TAPVQAVAQV NYLGLRHLTQ RLLPRIAPGG SIVNMSSILG
SQWPERLELH KALAATESYS EGQQWLASNP VAPGTCYQYF KEALIVWSYQ QSQAWFRDQS
VRVNCVAPGP VFTPILGDFV SMVGEERVAR DSLHMKRPAL ADEVAAVIAF LCSDASRWVN
GVNLPVDGGL AASYV
|
|---|
| |