| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_2935 |
|---|
| Symbol | |
|---|
| ID | 1184589 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | - |
|---|
| Start bp | 3299126 |
|---|
| End bp | 3299998 |
|---|
| Gene Length | 873 bp |
|---|
| Protein Length | 290 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637394296 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | NP_792733 |
|---|
| Protein GI | 28870114 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG2049] Allophanate hydrolase subunit 1 |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.19158 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCCGATC CGATTCGCTA CAGCTTTGGC GCTGATGAGC ACCTGTTCGC CGAGGTCAGT
GACAGCATGT CGCTGGAAGC TTTTTTCAAG GGGCTGGCGG TGACCCGTGC GGTCGAGCGC
TTGGCGCTGG ACGGCGTACT CGACGTGTGC CTGGCCAACG CCTCGTTCCA GATTCGTTTT
GACCCGGACC GTATCGCGCC TCATGCACTG CTCGAAGCCG TTCGCGGGGC CGAGGCCGGA
GCGGTCGCCG AGCGCACGCT GCAGACCCGC ATCATCGAGA TCCCGGTGCT CTACAACGAT
CCCTGGACCC ATGAAACCCT GATGCGCTTT CGCGACCGGC ACCAGGACCC TGGTTCGACG
GATCTGGAAT ACGCTGCGCG CATCAACAAT CTGGCCGATG TCGATGCGTT CATTGCTGCG
CACAGTGGTG CGCCTTGGTT TGTGTCAATG GTCGGCTTTG TTGCCGGGCT ACCGTTCATG
TTCCAGATGG TCGAGCGCGA GCGGCAGTTG CAAGTGCCCA AATACCTGCG CCCGCGCACC
GATACGCCAA AGCTTACGCT GGGTCATGGC GGGTGCTTTG GTTGCATCTA CTCGGTGCGC
GGGGCGGGTG GTTACCAGAT GTTCGGCGTC ACCCCGGCGC CGATCTACGA CCCGCAGCAG
GGGTTGGCGT ACCTGAAGGA GCATATGGTT TTTTTCAGGC CGGGAGACAT TGTGCAGTTC
AGACCGGTGG ATCGTGAAAC CTACGATCTG GCCGTGACCG AGGTAGAAGC GGGGCGCTTT
GATTTGCTGA TTCGCCCGGT CGAGTTTTCC CTCGACGCCT TTCTGGCCGA CCCCGTCGGC
TATCCCAGGT CGCTGCAGGA GGCGCTGGCA TGA
|
|---|
| Protein sequence | MADPIRYSFG ADEHLFAEVS DSMSLEAFFK GLAVTRAVER LALDGVLDVC LANASFQIRF
DPDRIAPHAL LEAVRGAEAG AVAERTLQTR IIEIPVLYND PWTHETLMRF RDRHQDPGST
DLEYAARINN LADVDAFIAA HSGAPWFVSM VGFVAGLPFM FQMVERERQL QVPKYLRPRT
DTPKLTLGHG GCFGCIYSVR GAGGYQMFGV TPAPIYDPQQ GLAYLKEHMV FFRPGDIVQF
RPVDRETYDL AVTEVEAGRF DLLIRPVEFS LDAFLADPVG YPRSLQEALA
|
|---|
| |