| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_2872 |
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| Symbol | |
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| ID | 1184526 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | + |
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| Start bp | 3232419 |
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| End bp | 3235118 |
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| Gene Length | 2700 bp |
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| Protein Length | 899 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 637394236 |
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| Product | HopL1 protein |
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| Protein accession | NP_792673 |
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| Protein GI | 28870054 |
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| COG category | [S] Function unknown |
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| COG ID | [COG4458] Uncharacterized protein conserved in bacteria, putative virulence factor |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.0638681 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACTACTC TGACCACCAG ACAGATACAA CTCGCCCACG CTTGGACATC CGTTCATACA
GGCGCTGGCC TGGCCCTGGA CTGGGTCGCC GATGTGGCCG AAAAGGTCGA GGAAATCGCC
ACCAAGGCCG ACGCCCTCAG CCGTGACTTG CACCGCGCGC GCAACCTGTC CCGCAGCCTT
GGGCGGGTCT CGACGACACC CATGGGTATC GGTTTCTTCG GCTTGTCTCA GGCAGGCAAG
AGCTACCTGA TTTCCGCTCT GGCGGCGGAC GAGAAAGGCC AGTTGCTGAC CCGGCTGGGT
ACTCAGCAAC TGGACTTCAT CAAGCACGTG AACCCGGTGG GCGGCGGTAA GGAGGCCACC
GGTCTGGTCA CGCGGTTCAC CCGCACCGCC GCGCCAAGTC TGGACCCGCA CTTTCCGGTG
GAGCTGCGTC TGTTTCGCGA GGTCGAGATC GCCATCATTT TGGCCAACGC CTGGTTTGAG
GATTTCGATC ATCAGCGCTT GAACAGCCAA GTCACCGATG CGCAGATCGA TGCCCTTTTG
CAGCGTTTCG AGGGGCAATT GGCAGCCGCT CCGACACCTG GCGTCAGCAG TGACGACGTG
GTGCTGCTAT GGGATTACCT GGAGCACCAT TACGCTAACG CCATGCGCCC GCTGAACGCC
CGTTATTGGC CTTGCGTGGT CAAACTGGCG CCGCGCTTGT CGGCACGCGA GCGCGCTCAA
TTGTTCGAGC CGCTGTGGGG CGGCATCGGC AAAATGACCG AAACCTATGA GCAACTGGCC
TCGGCCCTGC ACCGCCTGGG GCTGGCAGAG ACAGTTTTTG CGCCCATCAG CGCGCTGGTC
ACCGAGCGCG ATGGGCAACT GGTACAAAGC AAAAGCATCA TCAACGTCGA CATTCTCAGC
CGTCTTGGCG GCAGCGCGGA CTCGGCCATC GAGGTACGTC CGGCCAGTGA AGGCACTTTG
CGCCCTGCCG TGTCGGTGAA TCGGGCCGAA CTGGCGGCGC TCACCAACGA GTTGATTTTT
CGCCTGGATA ACGAACCGGC CAACGCCATC GTCAATAGCG TCGATCTGCT CGACTTCCCG
GGCTACCGCA GCCGGCAGAA GCTGATGAGC ATCAACGAGG CCAGCGAAGT CGACAGCAAT
GGCACCGCCA ACAATCCGGT CGCCAGGCTG TTGCTGCGCG GCAAGGTCGC TTACTTGTTT
GAGCGTTACA CCAACGAGCA GGAAATGAAC GCGCTGGTGA TGTGCACCAG CACCTTCAAG
CAGAGCGAAG TGGTGAGCGT CGGTCCGGTA CTCAAGAGCT GGATCGACAA GACCCAAGGC
ACCAGCCCCC AGCAGCGCGA TGGTCGGGCC AGCGGTCTGA TCTGGGCGTT GACCATGTGT
GACGGCTTTA TCGGCGGCGC GCTCAACGGC GAGGTTGTGC AGTTTCCCGA AGGTTGCGAC
AACATGCTCA AACTGACCAT GATCGAGCGA TTCGGCAACG AAGACTGGAT GAAACAATGG
GGCAGCACGC CTTTCAAAAA CACCTATCTG GTGCGCAAGC CGCGCTTCAA GACCAGCTTC
ATCGAGTTGG CGGCGGACGG TGAAGAACGC GCTTACAACG ACTCATCGCA CTCTGCGTTA
CAGGCATTGC AACAAGCGTT CAGCAACAGT GAACTGGTCA AGCGCCATGT GGCAGAACCG
CAGGACGCCT GGCAGGCAAT GCTGACACTG AACGACGGCG GCATGACTCG TTTCAGCTCG
GCGTTCAGCC CGATTGCCAA CATCGACTTC AAGTTACAGC GTATTGCCGA GCAACTGGAC
GAGTTGATGG TGCAATTACT GCCGCGCCTG GAGCAGTACT ACGAAGCCGG TGGCGAAGAC
GAACGGGCCA GGAAGAAGGT TATCGCCAAC CTGATTGCCC GCCCGTTCGC GACCACGCCG
CACGGCAAAC ACGTGCTTGG CGAACTGCTC GGTTACATGT CGTTGCCGGA ACAGCAGTTG
CGCGACCTTT ACCTGAACGG TGATTTCGCC AGCCCTGCCA GCGACGCCAC TGCACCGGTG
CAGGCCGTCG GCAAGCCTGA AGTGGAATAC GACATATTCG GCGAGGCCAT CGCAGCCACT
GCCACGGTGG AAATACCCGC GGCACCGGCC GTAGCGCCGC AATACCAGAG CCACGAACAC
CGTTTCGCCC GAGCGGCCTT CGACCTGTGG GCAACGCACC TGCGCAACCT CAGCCGTCGC
CAGCACCTGC TGGACCTGTT GGAGCTGCCT GCCGAGGCCA TCGCCCTGCT GGTCAAGGAA
CTGGTGGTCT GCGCCGAGCG CCTGGACTTG CCATTGCAGC TCAGCAACGC GCTGCTCAAG
CGCGCCCAGA GCGGTGTGCG CAAAGAAAAC CTGGTGCAGC GCCAAGTGCT GACCGCGCAA
CTGCTGCTCA ACGACTTCGC CGCCTGGTTC GGGCACACCG CCCAGCCGGC GGGTCAGCGG
CCAACGGGCC TGCTGGGTGC CAAACAACCG CTGTTTGCTT TTTATCAAAA GGAAATGCCA
GGGCGCTTCC CGCACCTCGC AGCGCAAGCC GACGACCAGA GCGTGATTTT CGCCGATGAC
TGGATTTCTG GCATTGCCAT TCATACCCAG AAAAACGTCG GCCACCGCAA GGGCAAAGAA
ATCACTCCTG AGCAGAACGA GGCCATGGGC CGCGTCATCC AGGCGTTCAA AGCGAGATAA
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| Protein sequence | MTTLTTRQIQ LAHAWTSVHT GAGLALDWVA DVAEKVEEIA TKADALSRDL HRARNLSRSL
GRVSTTPMGI GFFGLSQAGK SYLISALAAD EKGQLLTRLG TQQLDFIKHV NPVGGGKEAT
GLVTRFTRTA APSLDPHFPV ELRLFREVEI AIILANAWFE DFDHQRLNSQ VTDAQIDALL
QRFEGQLAAA PTPGVSSDDV VLLWDYLEHH YANAMRPLNA RYWPCVVKLA PRLSARERAQ
LFEPLWGGIG KMTETYEQLA SALHRLGLAE TVFAPISALV TERDGQLVQS KSIINVDILS
RLGGSADSAI EVRPASEGTL RPAVSVNRAE LAALTNELIF RLDNEPANAI VNSVDLLDFP
GYRSRQKLMS INEASEVDSN GTANNPVARL LLRGKVAYLF ERYTNEQEMN ALVMCTSTFK
QSEVVSVGPV LKSWIDKTQG TSPQQRDGRA SGLIWALTMC DGFIGGALNG EVVQFPEGCD
NMLKLTMIER FGNEDWMKQW GSTPFKNTYL VRKPRFKTSF IELAADGEER AYNDSSHSAL
QALQQAFSNS ELVKRHVAEP QDAWQAMLTL NDGGMTRFSS AFSPIANIDF KLQRIAEQLD
ELMVQLLPRL EQYYEAGGED ERARKKVIAN LIARPFATTP HGKHVLGELL GYMSLPEQQL
RDLYLNGDFA SPASDATAPV QAVGKPEVEY DIFGEAIAAT ATVEIPAAPA VAPQYQSHEH
RFARAAFDLW ATHLRNLSRR QHLLDLLELP AEAIALLVKE LVVCAERLDL PLQLSNALLK
RAQSGVRKEN LVQRQVLTAQ LLLNDFAAWF GHTAQPAGQR PTGLLGAKQP LFAFYQKEMP
GRFPHLAAQA DDQSVIFADD WISGIAIHTQ KNVGHRKGKE ITPEQNEAMG RVIQAFKAR
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