| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_2871 |
|---|
| Symbol | |
|---|
| ID | 1184525 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | + |
|---|
| Start bp | 3229288 |
|---|
| End bp | 3232422 |
|---|
| Gene Length | 3135 bp |
|---|
| Protein Length | 1044 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637394235 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | NP_792672 |
|---|
| Protein GI | 28870053 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG4457] Uncharacterized protein conserved in bacteria, putative virulence factor |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.33862 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTGCCAG AACTGACGCA ATTTGAAGAC ACCGTTCACC TGATCAATGA CAGCGGAATC
CAGTTCCTGG ACTTCGCCGT CAAACTGGAT CTGCGTAACG AGCCTGCAGG ACGTTTTGCG
AAAATGGGCA ATACGCTCAT TTCGCGTCTG CTGCAGAACC AGGAAACCAA GCAGTATTTC
CACTTCGGGC CGGTGGGCAC AGCCAACCAG TCCGGTGAGC GTCTGGCGCA ATCGCAGGCT
CAGGAGCGTC TGGTCAGCGA AGTCGACGAC GAAGACCTCA CGCTGGGTAT GCAGTCCAGT
TTCAAGCTGC TGGATGGCTT GTGGCTGCCC GCGCCGGTGT TTCGTTTTCT GCCGCCACAG
CGTTACGACG AAGGCCCGAC CAACTGGGCA CGGGTTCGTC TGATCGAGCT TGAACAGCCT
GATGTTGATG GCAACACTCA CCGTCTGACA CTGGCATTCG ACACGCGCTC GATGGCGTCG
GCAACCGGCA TGCAATACCT GGCACCGACC CGGGACGACA TCAATGCCGG TTCGTCCTTT
CGCCTGGCGT GCCACGCGCG CCAGAGCCGC TGGTTTCTGG ACCAGAAATG GGTGCAGGAC
TGGCTGGCGG AAATCTACCG TGAAGGCAAC CGGCATCGTC CCAGCGAAGA CGTTGAAGAA
GAGCTAGTCG AGCAGCGCCA CATTGGTCAC TACCTCAACC TGCTGAGCCT CATGGCCAAG
CCTATTCCCG AGCAGCGCAG CAGCGAACCT GCACGCGTTG TCGTCCCGGA AATAAAGCTT
GCCGCCAATG GCGCAGACTC GATAGACCCG CCTATTCAGG TGGACCTGGT GCTGGATGTG
GGCAACTCGC GCACCTGCGG CATTCTGATC GAGAACCACG GGCAGTCAGG CGACGGGATG
AAGCACAACT ACATCCTGCA GATTCGCGAT CTGGTCAACC CTGAGCGGGT CTACAGCCAG
CCGTTCGAGA GCCGTGTGGA GTTCGCCCAG GCCTCGTTCG GCAAGGAAAA CTTCTCGGTC
CAGAGTGGCC GGCATGATGC GTTTCAGTGG CCAACCATTG CCCGGGTCGG TGTCGAAGCC
GGGCGTTTGT CTGGCCGTCG GCGTGGGACT GAGGGCTCTA CAGGCCTGTC GAGCCCCAAA
CGCTACCTGT GGGACGAAAA CGCCTACACC CACGGCTGGC GCTTCAACAA TTCCTACGTG
CAGACCGACA GCGAGCCCAA AGCGACCGCC GCGCCGTTCT CGCACAAGAT CACCAAGCTC
GGTCAGGCGT TCTACAAGCT CAAGAATGAA GACGACCGCC TGCCTGCGTT CTCGCCGCAA
TACTCGCGCA GCTCGCTGAT GACATTCATG CTCGCCGAGG TGCTGACGCA AGCGCTGTTG
CAAATCAACA GCCCGGCGCA ACGCACTCGC ATGGGACACA CTCAGCGGCC TCGCCAGTTG
TCCAGCATCA TCCTGACCGT ACCGCCGGGG ATGCCGCAGG TAGAGCGCAG CTTGCTTAAC
GACCGGCTGC TTCAGGCGCT GGCGCTGGTC TGGAAATGCA TGGGCTGGCA CGAAGGCGAC
CTCGACCCGA GCAAGGCCAA GGGGCTGAAT TCGCCCGTGC CTGCGCCTCG TGTGCCGTTG
CCGCGCATAA AAGTGGAGTG GGATGAAGCC ACGTGCGGTC AGCTTGTCTA CCTGTACACC
GAAATTCGCG AGAACTTTGC CGGCCACGCA CAAGAATTCT TCGACACGCT GGCACGCCCG
GACAAGGCCA ATCGCGAACA TATCACTCTG GCAAGCATCG ATATCGGCGG CGGCACTACC
GACCTGGTCA TCACTGATTA CTCGCTGGAA CGCGGCGCTG AACAGGCGAG CGGCAGCAAC
GTTTCGATCA TCCCCGAACA GCGCTTCCGG GACAGCTTCA AGGTGGCCGG CGATGACATC
CTGCTGGACA TTATCCAGCG TTTTGTACTA CCCGCTCTGG AGCAAGCGCT CAGTGACTTT
GGTGTGGTTT CGCCGCGCTC GCTGCTGTCG CGACTGTGCG GCGACGAAAG CACCAGTGCC
CAGGAAGCCA TCCTGCGCCA ACAGCTGAAC CTGCAAGTGT TTGTGCCGCT GGGCCTGCGC
CTGCTCAAGG ACTACGAAAC CTACGACCCT GAATTGCCAA GCCCTGTTCA TGACTACCGT
TTTGCTGATC TGTTGGAAAA AGAGGCGATC AGTGACCGCA TTCGCGAATA CGTGGCCGGT
GGCGTGCGAC GCATTGATGG CGGTCGCGAT GGTTTCGAGC TGGGTCAGGT GGTACTGCGT
ATCGATCTGC CAGCCATTCA TCAGGCCTTC CTCAAAGGCC AGATCAACCT GAGCAAGATC
CTCGACGCGC TGTGTGAAGT GGTCTTCCAG TATCCGTGCG ACGCATTGCT GCTGACCGGT
CGCCCTTCGC GCTTGCCAGG CGTGCAGGCT TACATACGCC GCAAAGTGCC CCTGCCACCG
GGGCGCATCG TTTCCATGAA CGGTTATCGC ACTGGCGGGT GGTACCCCTT CCACCGCAAT
GGGCAGATTG ACGACCCCAA GAGCACCGCA GCGGTTGGCG CGATGCTGTG CCTGCTCAGC
GAGCAGCGCA AGGTGTCGAA CTTCTATTTC AGCGTTGGCC GGCTCAAGCC GTATTCGACC
ATGCGTCATA TCGGCAAGCT GGACGAAAAC AACCTGGTCA TCGACCACGA CATGCTGTAT
CGCGATGTGA TCAAAAGTGA CGCACAAGGC AACGAATTCC TTCAGTTGCA CGAGCCGCAG
CTCGATGGTC CGCAGCTGCG GGTGCTGGGT AAAACACGCC TGGGTTATCG ACAGCTCAAC
GCCGAGCGCT GGGTTGCGGC GCCTTTGTAT CTGATCGAAC TCACCGAGCG CGGCACGCGA
AAACTGGTCG GCAAACCGAC CAAGGACGGC AAGGAAGCCT GCCTGCTGCT GCGTTTTCGT
GTCGATGGCG CAGATGCCGA CCGTGGCGAT GCGGAGATCA TCGCTGAAAC CCTGGTGATC
GACGACAACA TCGAGAGCAA CACCGGTGAG TCCTTCGATC GCAAGGACGT GAAACTACAG
CTCTACACCA TGTTGAGCGC CGAAGGTGGT GCCTCCAACT ATTGGCTCGA CAGCGGGAGC
GTGAGTCCGA AATGA
|
|---|
| Protein sequence | MLPELTQFED TVHLINDSGI QFLDFAVKLD LRNEPAGRFA KMGNTLISRL LQNQETKQYF
HFGPVGTANQ SGERLAQSQA QERLVSEVDD EDLTLGMQSS FKLLDGLWLP APVFRFLPPQ
RYDEGPTNWA RVRLIELEQP DVDGNTHRLT LAFDTRSMAS ATGMQYLAPT RDDINAGSSF
RLACHARQSR WFLDQKWVQD WLAEIYREGN RHRPSEDVEE ELVEQRHIGH YLNLLSLMAK
PIPEQRSSEP ARVVVPEIKL AANGADSIDP PIQVDLVLDV GNSRTCGILI ENHGQSGDGM
KHNYILQIRD LVNPERVYSQ PFESRVEFAQ ASFGKENFSV QSGRHDAFQW PTIARVGVEA
GRLSGRRRGT EGSTGLSSPK RYLWDENAYT HGWRFNNSYV QTDSEPKATA APFSHKITKL
GQAFYKLKNE DDRLPAFSPQ YSRSSLMTFM LAEVLTQALL QINSPAQRTR MGHTQRPRQL
SSIILTVPPG MPQVERSLLN DRLLQALALV WKCMGWHEGD LDPSKAKGLN SPVPAPRVPL
PRIKVEWDEA TCGQLVYLYT EIRENFAGHA QEFFDTLARP DKANREHITL ASIDIGGGTT
DLVITDYSLE RGAEQASGSN VSIIPEQRFR DSFKVAGDDI LLDIIQRFVL PALEQALSDF
GVVSPRSLLS RLCGDESTSA QEAILRQQLN LQVFVPLGLR LLKDYETYDP ELPSPVHDYR
FADLLEKEAI SDRIREYVAG GVRRIDGGRD GFELGQVVLR IDLPAIHQAF LKGQINLSKI
LDALCEVVFQ YPCDALLLTG RPSRLPGVQA YIRRKVPLPP GRIVSMNGYR TGGWYPFHRN
GQIDDPKSTA AVGAMLCLLS EQRKVSNFYF SVGRLKPYST MRHIGKLDEN NLVIDHDMLY
RDVIKSDAQG NEFLQLHEPQ LDGPQLRVLG KTRLGYRQLN AERWVAAPLY LIELTERGTR
KLVGKPTKDG KEACLLLRFR VDGADADRGD AEIIAETLVI DDNIESNTGE SFDRKDVKLQ
LYTMLSAEGG ASNYWLDSGS VSPK
|
|---|
| |