| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_2866 |
|---|
| Symbol | |
|---|
| ID | 1184520 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | - |
|---|
| Start bp | 3224931 |
|---|
| End bp | 3225332 |
|---|
| Gene Length | 402 bp |
|---|
| Protein Length | 133 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 637394230 |
|---|
| Product | cupin family protein |
|---|
| Protein accession | NP_792667 |
|---|
| Protein GI | 28870048 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG1917] Uncharacterized conserved protein, contains double-stranded beta-helix domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.105692 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACGATCG TTAGAAATGG CGAGCAGGCA TCCATAATCG GGGCACCCAC TCATTTCGTG
GGCAACGCAC GAATAGACCC TCTGTTTGCC GCACAAGCAC CATCGAAGGT CTCGGCAGGC
TATGTCACCT TCCAGCCAGG GGCGCGATCC AATTGGCATA CCCACCCGCT GGGACAAACG
TTGGTGGTCA CGACGGGTAC CGGATGGGTT CAACAACAGG GCGCCGACAA ACAGGTCATC
AAGCCTGGGG ATGTGATATG GACGCCCCCC GGCATCAAGC ATTGGCATGG AGCAACGAGC
ACCACTGGCG TGACCCATAT GGCTATTCAA GAGGTGCTTG AGGGCAAAAG TGTCGAGTGG
CTTGAGCCTG TCACCGAAGC CCAGTACGGC GCTTCATTAT GA
|
|---|
| Protein sequence | MTIVRNGEQA SIIGAPTHFV GNARIDPLFA AQAPSKVSAG YVTFQPGARS NWHTHPLGQT
LVVTTGTGWV QQQGADKQVI KPGDVIWTPP GIKHWHGATS TTGVTHMAIQ EVLEGKSVEW
LEPVTEAQYG ASL
|
|---|
| |