| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_2801 |
|---|
| Symbol | |
|---|
| ID | 1184455 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | - |
|---|
| Start bp | 3122263 |
|---|
| End bp | 3123522 |
|---|
| Gene Length | 1260 bp |
|---|
| Protein Length | 419 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637394169 |
|---|
| Product | prolidase, putative |
|---|
| Protein accession | NP_792606 |
|---|
| Protein GI | 28869987 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG1228] Imidazolonepropionase and related amidohydrolases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.00617614 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTACCG CTGATACCAC CCGCCTGATT TTGCGCAACG GCCGTCTGCT GGACCTGCAG
CAGGGGCGAT TGATCCCGGG GCAGGAAGTC GTGATCGAGG GCGAACGGAT CGTAGCAGTG
CGTGCCGAGG GTGAAGCTGC CCCGGCAGAT GCGCAGGTTA TCGATCTGGG CGGCAGAACC
CTGATGCCCG GCCTGATCGA CTGCCATGTG CATGTGCTGG CGTCCAACGC CAACCTGGGC
ATGAACGCGT TGCAACCCAA CGCGATCATC ATGTACCGCG CCTTGCCGAT TCTGGCCGCA
ATGCTCAATC GTGGTTTCAC CACTGTGCGC GACGCCGGAG GAGCCGACTG GGCGCTGGCA
CGTTCGATCC AGATGGGCCT GATTCCCGGA CCAAGAATAT TTGCCTCCGG CAAGGCACTG
TCGCAGACCG GCGGGCATGG CGACATGCGC GCACGCGGCG AACTGTTGCT CAACGAACCG
TGCTCGTGCT GCTTCCGCGC CGGAGCCATC GCCCGCGTGG TGGACGGCGT CGATAATGTG
CGCCTGGCGG TGCGCGAAGA GCTGCAACAG GGTGCCAACC AGATCAAGAT CATGGCCTCG
GGCGGCGTTT CTTCACCGAC CGATCCGATT GCCAATACCC AGTACAGCGA GGCCGAAATC
CGCGCAATCG TCGATGAAGC GGCCGCAGCC AACACCTACG TCATGGCCCA TGCCTACACT
GCCCGAGCCA TTAGACGCGC CATCGAGTGC GGCGTACGGA CCATCGAGCA CGGCAATCTG
GTGGACGCCG ACACGGCTCG GCTGATGGCC GAAAAAGGCG CGTTTGCGGT GCCGACTCAG
GTGACCTACG AAATGCTCGC AGAATACGGC GAACGCTTTG GCCTGCCTGC CGACTCCGTG
GCCAAGATCG AGGACGTGCG TCAGGCCGGG CGCAACGCGC TGTTACTGTT CGCCGAAGCG
GGCGTGCCGA TGGGCTATGG CTCTGATCTT TTGGGCGAAA TGCACGAATA CCAGACCCAT
GAACTGAAGA TTCGTGCGGA GTTGCTGGGT AACCTGGCGG CGCTGCGCAG TGCAACCAGT
GTTGCCGCGC AGATACTTCA ACGCGAAGGT GAATTGGGGT GCATCGCGGC CGGTGCAATT
GCCGACCTGC TGGTGGTGGA CGGCGACCCG CTGAGCGATA TCAGCTGCCT GGTGGGCCAG
GGCGAGCAGT TGGCGATGAT TGTTCAGGGT GGTCATGTGC ACAAGAACAC CCTGGCCTGA
|
|---|
| Protein sequence | MSTADTTRLI LRNGRLLDLQ QGRLIPGQEV VIEGERIVAV RAEGEAAPAD AQVIDLGGRT
LMPGLIDCHV HVLASNANLG MNALQPNAII MYRALPILAA MLNRGFTTVR DAGGADWALA
RSIQMGLIPG PRIFASGKAL SQTGGHGDMR ARGELLLNEP CSCCFRAGAI ARVVDGVDNV
RLAVREELQQ GANQIKIMAS GGVSSPTDPI ANTQYSEAEI RAIVDEAAAA NTYVMAHAYT
ARAIRRAIEC GVRTIEHGNL VDADTARLMA EKGAFAVPTQ VTYEMLAEYG ERFGLPADSV
AKIEDVRQAG RNALLLFAEA GVPMGYGSDL LGEMHEYQTH ELKIRAELLG NLAALRSATS
VAAQILQREG ELGCIAAGAI ADLLVVDGDP LSDISCLVGQ GEQLAMIVQG GHVHKNTLA
|
|---|
| |